Amaranthus tricolor (tampala): 130828151
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Entry
130828151 CDS
T09367
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130828151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130828151
Enzymes [BR:
atri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130828151
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130828151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Mu_Gam-Sipho_Gp157-TOTE
Motif
Other DBs
NCBI-GeneID:
130828151
NCBI-ProteinID:
XP_057549954
LinkDB
All DBs
Position
12:1948712..1952589
Genome browser
AA seq
1193 aa
AA seq
DB search
MSDGVQFKVLVSLFNWIFKSKSHSAKRAKFRKYLDLYCKSDDYFSSIRLILPSLDRERGS
YGLKESVLATSLLDALGISRDSEDAKKLINWRKGGTKIAGDIAGNFALVAADILQRRQSS
AFGDLTIRELNELLDRLANAENRTSKTEILGDIIRRTNSEEMKWIIKIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLRFVCEKLNDKNIRHKRQDIEVAKAVRAQLAERASNCAFAW
KKLHGKEVVAECKFDGDRIQIHKNGNKVHYFSRNFIDHTEYEHGMSNVILENVVVDRCIL
DGEMLVWDNASNRFASWGKNQEIAKAAREGLDGEHQLCYVAFDVLYVGDTSVIHQTLKER
HEHLKKVVRPVKGRLQALLPNGSGKDNLNTHQSADEPCWSIVAHNLDEADRFYKAIVENR
DEGIVLKDLGSKWEPGDRSWKWIKVKPDYDYFNAGSDLDVLIIGGYYGSGRKGGEVAQFL
VGLAEKAAPGAYPRRFVSFCRVGTGLSDDELDELVTKLKPYLRKYEYPKMSPPSFYQVTN
HFKERPDVWVESPEKSVIVSITSDIRTISSEVFAAPYSLRFPRIDRLRYDKPWHECLDVQ
SFIKLVQLSNGTTQRGGGANNDGLSADKPKRRRAAKNGAKKKLNLTVPSHFTQTDVSSVK
GESRIFANMVFHFVNLSSSHSLDSMHKLVVENGGTFSMNLNDTVTHSIGGESRGIKFEAA
KRRGCDVIHHSWVLNCCSQKQLLPLRPQDFVFLSDSTKKKLQEEVDELSDSYFWDVNVTE
LKQIFCNVSRSENTKAVDYYKKKYCPREEWVRFHGCCVYFHLFAMSHFPEWDIFLKVSMR
RMKVEVSLGGGKVSDNPSQATHVVVMSVPGPERPEHELKFETLLQSFPEDQKHLLRKKRL
HVVRSHWLVDCCKEKRKLSEELYNLRPTALEEESASEEEKGENDDEYEKHPSPAYEVKPK
KIDSKTIASRIREPKRKRGRQTETSTRKRKIIVSKPPRQKRARVGSRPAKLQDFTVDDEP
SEQETDVAEASPELEMHDHDFQDVAFDDKSSEQGTNTVVKTDSEPEDSGSARRNHVLEKI
KENRIEEHNPDFDTTGSRCLENFSTVGCITPEKDEDNSTLRNSEVMDSPAEAMSLDKNPN
RQDLSEASNAVFNYKNLPSSQSLEESSVKPLKGEPVKKKKVSYKELVMQLLKD
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggcgtccaattcaaagtacttgtcagtctcttcaattggatatttaaatca
aaatcacactccgcaaaacgcgctaaatttcgcaaatatcttgatctttactgcaaatca
gatgattatttctcatcaattcgtctcattttaccttctttggatcgcgaacgaggttca
tacgggcttaaagaatcagttcttgccacttctctccttgacgcacttggaatttctcgc
gattccgaagatgcaaaaaaactcatcaattggcgaaaaggtggtacaaaaattgctggt
gatattgccggaaacttcgctcttgtcgccgctgatattctgcaacgccgacaaagttct
gccttcggtgacttaactattcgtgaactcaatgaacttcttgatcgtctggcgaatgcc
gagaatcggacctcaaagacagagattttaggtgatataatacgaaggacgaattctgag
gagatgaagtggataatcaagataattttgaaggatttgaaactaggtattagtgaaaag
agcatttttcacgagtttcatcctgatgcggaagatttgttcaatgtaacgtgtgattta
cgttttgtttgcgagaaattgaatgataagaatattcggcataagagacaagatattgag
gttgcgaaagcagtgagagctcagcttgctgagagagcttcgaattgtgcatttgcttgg
aagaaacttcatggaaaggaagtcgttgctgagtgtaaattcgacggtgatcgaattcaa
attcataagaatggtaataaggtacattatttttcgcgaaattttattgatcatactgaa
tatgagcatggtatgtctaatgttatattagaaaatgtggtagttgataggtgtatactt
gatggtgagatgttagtttgggataatgctagtaatcggtttgctagttggggaaaaaat
caagagattgcgaaggcggctagagaaggtttagatggggaacaccaattgtgttatgtt
gcttttgatgtgttatatgttggggatactagtgtgattcatcagacattgaaggaaaga
catgaacatcttaagaaggttgtgagacccgtaaaggggcgtttgcaggctttgttgccc
aatggtagtggtaaggataatcttaatactcaccaaagtgctgatgagccatgttggtct
attgtagctcataatttggatgaggctgataggttttataaggcaattgttgagaatcgg
gatgagggtattgttttgaaggatctaggttcgaaatgggagccaggggacaggagttgg
aaatggattaaggtgaagcctgattatgattattttaatgcagggtctgatttggatgtt
ttgatcataggagggtattatggttctggacgtaaaggaggagaggtggctcagtttttg
gtgggcttggcggagaaggctgctccgggtgcctatcctaggagatttgtttctttttgt
agagtaggtacggggctttctgatgatgagcttgatgaattagtgactaaattgaagccg
tatttgaggaaatatgagtacccaaagatgtcacccccgagtttttatcaagttactaat
cacttcaaggaaaggccagatgtttgggttgagagtcctgaaaagtctgtgatagtgtca
attactagtgatattcgtacgataagttctgaggttttcgctgcaccttacagcttgaga
tttccgcggattgaccggctaaggtatgacaagccatggcatgagtgccttgatgttcag
tctttcataaagctggtgcagttgagtaatgggacaacacaaagaggaggaggtgcaaat
aatgatgggttgtcagctgataaacccaaacgtcgcagagctgcaaaaaatggtgcgaag
aagaaactcaatcttactgttccttctcatttcactcagactgacgtttctagtgtgaaa
ggagagtcaagaatatttgcgaacatggtatttcactttgtcaatttatcttctagtcat
tccttggactccatgcacaaattagtcgttgagaatggtggtactttctcaatgaatttg
aatgatacagttactcattctattggaggagagagtcgaggaatcaagtttgaggcagca
aagaggcgtgggtgcgatgttatccatcactcttgggttttgaattgctgctctcagaag
cagcttctccctttgaggccccaagattttgtgtttctgtcagactcgacaaagaagaag
ctacaagaggaggttgatgaattatctgactcttatttttgggatgttaatgttaccgaa
ttgaagcagattttttgtaatgtgagtagatcggaaaatacaaaagctgttgactactac
aagaaaaagtattgcccacgtgaagaatgggttcgttttcatggttgttgtgtatatttt
cacctatttgcaatgtctcactttcctgaatgggatatctttttaaaagtatccatgagg
agaatgaaagtagaagtttctttaggtggtggaaaagttagtgacaacccttctcaagca
acccatgttgtagtcatgtcagtgccaggacctgagcgtccggagcatgagctgaagttt
gaaaccttgttgcagagcttccctgaggaccagaagcatctcttgcgtaaaaaaagactc
catgtggttagatcacattggttagttgattgctgcaaggagaagcgaaaactgtccgaa
gaattgtacaacttgaggccaacggccttagaagaagaatctgcctctgaagaagagaaa
ggtgaaaacgatgatgagtatgagaagcacccatctcctgcttatgaagtaaagccgaag
aaaattgattcgaagaccattgccagtcgtattagggaacccaaaagaaaacgaggacgg
cagactgaaactagcactagaaaaagaaaaatcatagtcagcaaacctccaagacaaaaa
agagcaagagttggaagtaggccggctaaattacaggatttcaccgtagatgacgagcct
agtgagcaagaaactgatgtagcagaagcgagccctgaacttgaaatgcatgaccatgat
ttccaggacgttgcttttgatgacaagtctagtgagcaggggactaatacggtggtaaaa
actgattctgaacctgaagatagtggatcagctcgaagaaaccatgtgttggagaagata
aaagagaacaggatagaagaacacaaccccgactttgacacaacagggagtcgctgctta
gaaaattttagcaccgttggttgcattacaccggaaaaagacgaagacaactctacctta
aggaactcggaggttatggatagtccagctgaagcaatgtcgctagataagaacccaaat
cgtcaagatttatcggaagcttcaaatgccgttttcaattacaagaacttaccatcaagt
caatcactagaggaatcttctgtcaagcccctaaagggagaaccagtgaagaaaaagaaa
gtgagctataaggaacttgtaatgcagcttctaaaagactga
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