Amaranthus tricolor (tampala): 130828424
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Entry
130828424 CDS
T09367
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04075
Plant hormone signal transduction
atri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
130828424
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130828424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atri03000
]
130828424
Transcription factors [BR:
atri03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
130828424
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
130828424
NCBI-ProteinID:
XP_057550388
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Position
12:complement(6950115..6955595)
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AA seq
659 aa
AA seq
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MPLTELVRMFKGKVEVSQDGSSNSIDPSSRPDTDCVELVWENGQIMMHGKPRKNPISNNT
QTFGSKSQDGKIANNLKITKFSQMDSTMAELPMCVPSCEMSLDQDVDLVPWLNYHMDEPL
HNDYTSDFVNELSGVTINDLPSGNLLVNREKKTNVHGDGSHDTSMTLKHSHTSKPLSSIE
KDNKVGSSEVPQYLLPIQHSVGAPRDSLLNPPSLSSFTSLRLQKLDAEQTSTSSGFTNFP
YFSWPAAFSRASPVTIDRIKRLENNDNRCTLMSSNPANFTRANLDSGGIVSRKQPTMPSA
NVNSEDLCSAKEPLHREEITKNQMSPNQVCDDSTKKVGASGDKIIEPAVAASSVCSGNSF
DRTSNEPSRNLKRKSRETAESSGPSEEVEEESMAAKKPVCGRNGSKRSRAAEVHNLSERR
RRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKKLQLQVQILSMGSGLYMQPMMLPP
GMQHIQGAHMPHFSPMGLGMGVAMGYGMNMLNMGGGAKMAPFQGLHYPIPGTGPTFPGMP
GSSLQAFPHPGQGLPMSMQQPPVIPPRMVQSLMPMGPNASGVAETTNAPLVTSSSGKKDA
NPQAILSSVASNVVNSSLNLEINQASNEGIQRSVMSHNQAQDVNPSETEVANRKNTMHS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgactgagcttgttagaatgttcaaaggaaaagtggaggtttcccaagatgga
tcatccaattccattgatccttcctctagaccagatactgattgtgttgagctagtttgg
gaaaatggtcagatcatgatgcatggtaaacctagaaagaatcctatttcaaacaatact
caaacatttggctcaaaatctcaagatggtaaaattgccaataacttaaaaataaccaag
tttagccaaatggattctacaatggctgaactccccatgtgtgttccttcttgtgaaatg
agtttggatcaagatgttgacttagtaccctggttgaattatcacatggatgaacctttg
cataatgactatacttctgacttcgtgaatgagttatcaggagttaccatcaatgatctt
ccctcgggaaatcttctagtaaatcgtgaaaagaaaactaacgttcatggtgatggtagc
catgatacgtcgatgactttgaaacacagccatacgtctaagcccctgtcgagtattgag
aaggataataaagtaggaagtagtgaggtaccccaatatttgttgccaattcaacatagt
gtaggtgctccacgagactccttgctgaatccaccatcgcttagttcttttacgagcttg
agattgcagaagctagatgcagaacagactagtactagctcgggttttacaaatttccct
tacttttcgtggcctgctgcgttttctagagctagcccggtgactatagaccgcattaag
agactagagaacaatgataataggtgcactttgatgagtagtaaccctgctaattttact
cgagctaacttggatagtggcgggatagtttctcgaaaacaacccactatgccatcagca
aatgtgaattcggaagatctgtgttctgctaaggaacctttacacagagaagaaatcacg
aaaaatcagatgtcaccgaatcaagtatgtgatgattcaacgaaaaaagtgggtgctagt
ggtgataagattatcgaaccagctgttgcagcgtcttctgtatgttcaggcaatagtttt
gatagaacgtctaatgaaccttcgcgtaatttgaaaagaaaatctcgtgaaactgcagaa
tcgtcaggtcctagtgaagaagttgaagaggaatcaatggctgcaaagaaacctgtttgt
ggtcgaaatggttcaaagagaagccgagctgcagaagtgcataatctttctgaaaggaga
cgaagggacagaattaacgagaagatgcgtgcattacaagagcttatacccaattgcaac
aaggcggacaaagcttctatgcttgacgaggctatagagtatttaaagaaactccagctt
caagttcagatattgtcaatgggttctgggttgtatatgcagcccatgatgctgccaccg
ggaatgcaacacatccaaggagcacatatgccacatttctcgcctatggggcttggaatg
ggcgtggcaatgggctacggaatgaatatgctcaacatgggtggtggtgcaaagatggca
ccttttcaaggcctgcattaccctattcccggaactgggcccacatttccgggaatgcca
ggttctagccttcaggctttcccacatcccggtcaaggattgccaatgtccatgcaacaa
ccccctgtaattcctcctcgaatggttcaaagcctgatgccaatgggaccaaatgcctcg
ggcgtagctgagacgacaaacgcaccacttgtaacttcatctagtggtaaaaaggacgct
aacccacaagcaattcttagtagcgtggctagcaacgtcgttaacagctccttgaatctc
gagattaatcaggcatcaaatgagggtattcagcggtctgtaatgagccataatcaggct
caagatgttaatccctcggaaactgaagttgccaacagaaaaaacacgatgcacagctga
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