Aegilops tauschii (wheat D): 109762497
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Entry
109762497 CDS
T04345
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
109762497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109762497
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
109762497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Frigida
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
109762497
NCBI-ProteinID:
XP_020176946
LinkDB
All DBs
Position
5D:503545274..503559655
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AA seq
1313 aa
AA seq
DB search
MGVPAFYRWLADRYPQTVSDAEEEEPVELEPGAFVPVDPRRPNPNGLEFDNLYLDMNGII
HPCFHPEGRPSPTTYDEVFKSIFDYIDHLFCLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRLEFEAEGRNLVRKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ
LRLNHSPGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHVLYGLDADLIML
ALATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECQGPGPADNVVELPPIHKKKYQF
LNIWVLREYLEKDLEIVDPPFKINLERILDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MNIYRAEFKPMGGYLTDGGEVLLERVEHFIQAVAIHEEQIFRKRARIQKAYENNEDRRRA
QGETSEENQYVDMVKLGEPGFRERYYAEKFREEAESKPIDQVQRDVVQKYAEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKNLTEFEITFFLGQPFKPFDQLMGTLPAASSNALPKH
YGDLMTDPNSPLNYFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEDTLTEEE
RFRNTTMFDIIYVRETHPLAAQIAFLYQMYSQQMITDPSYCVPIDPAASGGMNGFLCLSQ
RNWYSISVGSPVKGFNGITNNRVLNATYVNPQYHKHIPEPPEGAIIPPKILKPYDFKPFP
VLWHEDNSRRQTRDRPQVHGALTGSVLGEAAHRLLKNSLQIKSGSSAGLLHVPYGAAPYG
PGNRARPSGPLGYGRGFVDNPYHAHMSRSAPNPRPQFFGEAQPNRQNVRILERPNNRNHD
GGIHSGMSKLTIQDGPRMHQNPRMQSPGYFPNQPYPNQYGGFPPQRPMQNANFAPQRPFQ
NAPFPQQRPVQNAGFAQQRPVQNAGFMQQQQPVNGVPPPLPPSTWIGKQPSGGQAGTPAK
QQDPRTNRQPKQDNRQPKQDNLRSQHESRQQAAKVFTQESDQASVTHHWTSVGLXPTSAL
HVATFAVAEKEDKELYKRIVLSFSWRRQMPRLALTLGLEDDMEEIIEELITKGQQLDAVN
FAYEAGLLEKFSPVPLLKSYLEDSKKMYCTSDNVSTSSGQSGVNANKKEQSALRAVIKCV
EDHKLEAEFPLEDLRKRLEELEMAKTEKKKAASSCSSGGPASKRIKGSAGGAMSPSKSGR
LSDNTGAPSSPATATSSSTATAFIGSPASHVSYGTGSPYSYDRSAGHALYCGQSPLPMRE
PYAYPPAVPVPNVGLGMPYQAPPMTYPIYAGYNSGPGAYGNAMAPAFHQAYYR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctacaggtggctggcggaccggtacccccagacggtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggggccttcgtccccgtcgacccccgc
cgccccaaccccaacggcctcgagttcgacaacctctacctcgacatgaacggcatcatc
cacccctgcttccaccccgagggccggccctccccgaccacctacgacgaggtgttcaag
tcgatttttgactacatcgaccacctcttctgcctcgtccgccccaggaagatcctctac
atggcgatagacggtgttgcgccgagggccaagatgaatcagcaacggtccaggcggttc
cgggctgccaaggacgcggctgatgcggcggccgaggaggaaaggctgaggctggagttc
gaggcagaggggaggaatttggtccggaaggagaagtcggaggcaatcgactcgaatgtc
ataactcccgggacgcccttcatgtttgtactctcttcggcgctccagtactacatacag
ttgagattgaatcactcccctgggtggcagtctgtcaaggtaatattgtctgactcgaat
gttcctggagagggggaacataagatcatgtcatatatccgtctgcagcgcaatcttcca
gggtttgaccccaacacacgccatgtcttatatggccttgatgctgatttgatcatgctt
gctctggcaactcatgaggtccacttctcgattttaagagaggtgatcaccatgccaggg
caacatgaaaaatgctttctgtgtggtcaagttgggcatttggctgctgagtgccaaggc
cctggtccggctgataatgtcgtagagctccctccaattcataaaaagaagtatcagttt
cttaacatctgggtgctgcgggaatacctggagaaggatctggagattgtagatcccccc
ttcaagataaaccttgaacgcatcttggatgattttgtgtttctctgcttctttgttggg
aatgactttctgcctcacatgccaactttggaaattcgtgagggtgcgattaatcttctg
atgaatatttatagagcagagttcaaaccaatgggcggttacctcactgatgggggtgag
gttttactagaacgagtggagcatttcattcaggctgttgctatccatgaagaacaaatt
ttccggaagcgtgcacgtattcagaaggcgtacgagaacaacgaggatagacgtagagcg
cagggagagacctccgaggaaaatcaatatgtggacatggttaaactaggagagccggga
ttcagggagaggtactatgctgagaaatttagagaagaggcagaatcaaagcccattgat
caagttcagagagatgttgttcagaaatatgcggaaggtctttgctgggtcatgagatac
tactatcagggtgtttgttcatggcagtggttctatccataccattatgcgccttttgca
tctgacctgaaaaacttgactgagtttgagataacctttttcttgggtcaacctttcaag
ccatttgatcaactaatgggaacactgccagctgctagctctaatgcactgccgaagcac
tacggggatttgatgactgatccaaattcaccgttgaattatttctatcccaaagatttt
gaaatagacatgaatggaaagcgttttgcatggcagggtattgcgaaattgccttttatt
gatgaaaggcggttgcttgcggagacacagaaacttgaagatacattaacagaagaagag
agattcaggaatacgacaatgtttgacataatttatgtgcgggaaactcatccattggct
gctcagattgcattcctgtatcagatgtactctcaacaaatgataacagatccttcctat
tgtgtccccattgaccctgctgctagtggcggaatgaatggatttctttgtttatctcaa
agaaattggtacagcatctctgtaggatctccagttaaggggttcaatggcatcaccaat
aaccgagttttgaatgctacctatgttaaccctcagtatcacaaacacatcccagagcct
ccagagggtgccattatacctccaaagatattgaaaccttacgatttcaaacctttccct
gtgttgtggcatgaagataatagtcggcgacagacacgagacaggcctcaggtgcatgga
gctctgacaggttctgtcttaggcgaggctgcacatcgtctactgaaaaattccctgcag
atcaaatctggcagctctgctgggctgcttcatgttccatacggagcagcaccctatggc
cctggaaacagagcaaggccctctggacctttgggatatgggaggggttttgtggacaac
ccataccatgcacacatgtccagaagcgctccaaatcctcggcctcagttctttggtgaa
gctcaacccaacagacagaatgtgcggatactagagcggccaaacaatcgaaaccacgat
ggtggcatccattcagggatgtcaaagctgacaattcaagatgggccaagaatgcatcaa
aatcccaggatgcagagtcctggatattttccaaaccagccatatccgaatcagtatggt
gggttcccaccccagcggcccatgcagaatgccaattttgcaccgcagcggcctttccaa
aatgcaccattcccacagcagcggcctgttcaaaatgcaggattcgcacagcagaggcct
gttcaaaatgcaggattcatgcagcagcagcaaccagtgaacggggttcccccaccacta
cctcccagcacttggatcggcaagcaaccaagcggaggccaggctggtacacctgccaag
cagcaggacccgaggacaaatagacagcctaagcaggataatagacagccaaagcaggat
aacctgagatcacagcatgagagcagacagcaggctgccaaggtgttcacacaagagtct
gaccaggccagcgttactcaccactggacgtcggtgggacttntgcctaccagtgcgctg
cacgtcgccaccttcgccgtggcggagaaggaggacaaggagctctacaagaggatcgtt
ctcagcttctcctggcgcaggcagatgccacgccttgctctcacgcttggcctcgaggat
gacatggaagaaatcattgaagaacttatcacaaaggggcaacaacttgatgccgtgaac
tttgcatatgaggctggtcttctggaaaaattctccccagtccctcttttgaaatcctac
ctggaggattctaagaagatgtattgcacttcagataacgtgagcaccagcagtggccaa
tctggggtaaatgcaaataagaaggaacagtctgcgcttcgggctgttataaagtgtgtt
gaggaccacaaacttgaagctgagtttccattggaggatctccggaagcggctggaagaa
ttggagatggcaaagactgagaagaaaaaggcagcgtcgagttgttccagtggcggccca
gcaagcaagcgcatcaaaggtagtgctgggggagcaatgtccccttccaagtctggtcgt
ctaagcgacaacaccggtgcaccatcttcgcccgcgaccgccaccagcagcagcactgcc
accgcattcatcggctctccagcctcccatgtctcctacggtaccggatctccctactct
tatgataggtcagctgggcacgccctctactgtggccagagcccacttccaatgagggag
ccatatgcatacccacctgctgtgccggtgcctaatgttggccttggaatgccataccaa
gcccctcccatgacctaccccatctacgccggttacaacagcggcccgggagcctatggc
aatgccatggccccagcctttcaccaggcttactaccggtag
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