Acidiferrobacter thiooxydans: A9R16_009845
Help
Entry
A9R16_009845 CDS
T07877
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aty
Acidiferrobacter thiooxydans
Pathway
aty03030
DNA replication
aty03410
Base excision repair
aty03420
Nucleotide excision repair
aty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A9R16_009845 (ligA)
03410 Base excision repair
A9R16_009845 (ligA)
03420 Nucleotide excision repair
A9R16_009845 (ligA)
03430 Mismatch repair
A9R16_009845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aty03032
]
A9R16_009845 (ligA)
03400 DNA repair and recombination proteins [BR:
aty03400
]
A9R16_009845 (ligA)
Enzymes [BR:
aty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A9R16_009845 (ligA)
DNA replication proteins [BR:
aty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A9R16_009845 (ligA)
DNA repair and recombination proteins [BR:
aty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A9R16_009845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A9R16_009845 (ligA)
MMR (mismatch excision repair)
DNA ligase
A9R16_009845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A9R16_009845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DZR_2
5_3_exonuc
DUF4796_N
RNA_pol_A_CTD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UEN98734
LinkDB
All DBs
Position
complement(2017011..2019038)
Genome browser
AA seq
675 aa
AA seq
DB search
MTRDAADARAAELRAALDYHNHRYYVLDDPEISDAEYDRLFAELVALERARPDLARPDSP
TQRVGARPSTAFVPVVHGQAMLSLANVFSEQELADFDRRVRERLGHDDVIYVAEPKLDGL
AVSLRYEDGLLVRAATRGDGTTGEDVTANVRTIRTCPLRLQSAAPPRVLEVRGEVYMPRD
GFLRLNEMQVAQGGKPFANPRNAAAGSLRQLDPTISAQRPLRLFCYGVGDWSGGDAPRTQ
ERLLTCLADFGLPVNPERRVVTGYEGCLRYYADLGRRRGELAYEIDGVVYKVNEVAEQRL
LGELSRTPRWAVAHKFPAEEAVTQVVRIDVQVGRTGALTPVAVLTPVAVGGVMVSHATLH
NPDELARKDVRIGDWVSVRRAGDVIPEIVGVVLDKRPDDAKPFRFPDRCPVCGSPVVRDQ
GVVARCAGGLVCQAQRRQTIRHFASRRALDMEGVGDKLVEQLVDGGLVETVTDLFKLTVS
DLAGLERMGERSATKVTQAIAASRVTTFPRFLYALGIPEVGEATARALAQHFASLEALMA
ADEHELTAVPDVGPVVAHAIAVFFSEPHNRAVIAGLQAAGVRWPALERPARGPLSGKTVV
LTGTLEGMTREQARAALEGLGAKVVSSVSPRTDFVVAGRDPGSKVKRAREYGVPVIDEQG
LRAWLGKGPVTDDAS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgagacgcggccgacgcgcgcgcggccgagctgcgcgctgcgcttgactaccac
aatcatcgctactatgtgttggacgacccggaaatcagcgatgccgagtatgaccggctg
ttcgccgagctcgtggcactcgagcgcgcgcggcccgatctcgcgcggcccgattcaccc
acgcagagagtgggggcgcggccgagcacggcgtttgtcccggtggtccatgggcaggcg
atgctatcgctggcgaatgtcttttctgagcaagagcttgccgatttcgatcgacgcgtg
cgcgagcgtctgggacatgacgatgtcatttacgtcgcagagcccaaactcgatggtttg
gcggtaagcctgcgctatgaagacgggttgctggtgcgcgcggccacgcgcggcgatggc
accaccggagaagatgtgacggctaatgtgcgtacgattcgcacttgccctttgcgcctg
cagagcgccgcgccgccgcgtgtcctggaggttcggggcgaggtctacatgccgcgcgac
ggattcctgcgcctgaatgagatgcaggtggcgcagggcggaaagccgttcgccaatcca
cgcaatgcggccgcggggagcctgcgccagctcgatccgacgatcagtgcgcaacgtccc
ttgcggttattttgttatggtgtcggcgattggtccggtggcgatgcgccgcgtacccag
gagcggcttctcacttgtcttgcggactttgggctgccggtcaatcccgagcggcgcgtg
gtgacgggctatgagggctgcctacgatattacgcggatctcggacgccgtcgcggtgag
cttgcctacgagatcgatggcgtggtctataaggtcaacgaggtcgctgagcagcgcctc
ctcggggagctgtcgcgcacgccacgctgggcggtagcccacaagttcccagccgaggag
gccgtgacgcaggtcgtgcgcatcgatgtgcaggtgggccgcacgggggccttgacgccg
gttgcagtcttgacaccggtggccgtcggcggcgtgatggtgagccacgcgaccttacac
aatcccgatgagctggctcgcaaggacgtgcgcatcggggactgggtgagcgtgcgccgc
gccggtgatgtgatccccgagattgtcggcgtggtgcttgataaacgcccggacgatgcc
aagccatttcgctttccagaccgttgtccggtgtgcgggtccccggtggtgcgcgatcag
ggcgtggtggcgcgttgcgcgggtggtctcgtctgtcaggcgcagaggcgccaaacgatc
cgtcattttgcctcgcgacgggccttggatatggagggcgtaggcgacaaactggtcgaa
cagttggtcgacggcggtcttgtcgagacggtcaccgatctcttcaagctgacggtttcg
gacctggcgggcctcgaacgcatgggcgagcggtccgcaaccaaggtcacgcaggccatc
gccgcgagccgtgtgacgacctttcctcgctttttgtacgcgctcggaattccggaggtg
ggtgaggccaccgcacgcgccctggcgcagcacttcgcgagtctcgaggccctcatggcg
gccgacgagcatgaactcacggcggtgcccgatgtcgggccggtagtcgcgcatgccatc
gccgtgttcttctccgagccccataatcgcgccgtgatcgccggtctgcaggccgcgggg
gttcgctggccggcactggagaggccggcccgtggaccgctatccggcaagaccgtggtg
ctcacagggaccctggagggcatgacgcgcgaacaggcgcgcgcggccctcgaaggtctt
ggggcgaaggtcgtctcaagtgtctcgccgcgcacggatttcgtggtggccgggcgcgat
ccgggcagcaaggtgaaacgagccagggagtacggcgtaccggtcatagatgagcaagga
ctgcgcgcatggctcggtaaaggcccggttacggacgacgcgtcatag
DBGET
integrated database retrieval system
