Aurantimonas sp. HBX-1: LXB15_05330
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Entry
LXB15_05330 CDS
T07802
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aub
Aurantimonas sp. HBX-1
Pathway
aub03030
DNA replication
aub03410
Base excision repair
aub03420
Nucleotide excision repair
aub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LXB15_05330 (ligA)
03410 Base excision repair
LXB15_05330 (ligA)
03420 Nucleotide excision repair
LXB15_05330 (ligA)
03430 Mismatch repair
LXB15_05330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aub03032
]
LXB15_05330 (ligA)
03400 DNA repair and recombination proteins [BR:
aub03400
]
LXB15_05330 (ligA)
Enzymes [BR:
aub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LXB15_05330 (ligA)
DNA replication proteins [BR:
aub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LXB15_05330 (ligA)
DNA repair and recombination proteins [BR:
aub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LXB15_05330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LXB15_05330 (ligA)
MMR (mismatch excision repair)
DNA ligase
LXB15_05330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LXB15_05330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
Nlig-Ia
Ribosomal_L9_C
Motif
Other DBs
NCBI-ProteinID:
UIJ73073
LinkDB
All DBs
Position
1132370..1134490
Genome browser
AA seq
706 aa
AA seq
DB search
MSDTPVEELTETDAAAELERLAHEIAAHDRRYYAEDAPTVSDAEYDALRRRNSAIEARFP
GLIREDSPSARVGTEVSDKFGKIRHSIPMLSLDNAFSDEDVADFAKRVRRFLKLDEAAPL
GITAEPKIDGLSLSLRYEQGELVSAATRGDGTTGEDVTRNARTVSDIPNRLKGSVPDVFE
VRGEVYMSHAGFAALNASQAEEGKPIYANPRNAAAGSLRQLDAGITRRRKLNFFAYAWGE
ASEVPGDTQMAVVAAMKAMGFPTLDLMQRFETIEGLIAHYHRIEEGRAGLGYDIDGVVYK
VDDLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRDIEIQVGRTGALTPVAKLDPVTVGG
VVVQNATLHNAEEIERLDVRVGDTVQIQRAGDVIPQVLGIVPDKRPKGAKPFAFPDTCPC
ELKTPVVREETASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIDGLGEKQIDLFYD
DPDFRVRTPADIFRMRDRDAASLKKLKDKEGFGEVSARNLFEAIEARRTIALDRLIFSLG
IRHVGEATAKTLARAYGSFDAFHVAALKVAEGDAEAAAEMDALEDIGGAVITAVARFFSE
EHNRRLVEELVRELTIETVEKPAATSPVSGQTIVFTGSLERMTRDEAKAMAEALGAKVAG
SVSKKTDLVVAGPGAGSKLKKAAEFEVEVIDEDAWFERIGRGGEAG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgccggtcgaggaactgacggagaccgatgccgccgcggagctggaacgg
ctggcgcatgagatcgccgcgcacgaccggcgctactacgccgaggacgcgccgactgtc
tcggacgccgagtacgacgcgctgcggcgccgcaacagcgccatcgaagcgcggtttccc
ggcctgatccgggaagactcgccgtccgcccgggtcggcaccgaggtgtcggacaagttc
ggcaagatccgccattccatcccgatgctgtcgctggacaacgccttctccgacgaggac
gtcgcggacttcgccaagcgcgtgcggcgcttcctgaagctcgacgaggcggcgccgctg
gggatcactgcggagccgaagatcgacggcctgtcgctgtcgctgcgctacgagcagggc
gagctggtttcggcggcgacgcgcggcgacggcaccaccggcgaggacgtcacccgcaac
gcccgcaccgtgtccgacatcccgaaccggctgaaagggtccgtgccggacgtcttcgag
gtgcgcggcgaggtctatatgagccatgccggctttgcggcgctcaatgcgagccaggcc
gaggaaggcaagccgatctacgccaacccgcgcaacgccgcggccgggtcgctgcgccag
ctcgacgccggcatcacaaggcgccgcaagctgaacttcttcgcctatgcctggggcgag
gcgagcgaggtgccgggcgacacgcagatggcggtcgtcgcggcaatgaaggcgatgggc
tttccgacgctcgacctgatgcagcgcttcgagacgatcgaggggctgatcgcgcattac
caccggatcgaggagggcagggccgggctcggctacgacatcgacggcgtggtctacaag
gtcgacgacctcgcgctgcagaagcggctcggcttcgtctcgcgctcgccgcgctgggcg
atcgcccacaagtttcccgccgagcaggcgacaacggtgctgcgcgacatcgagatccag
gtcgggcgcacaggcgcgctgacgccggtcgccaagctggatccggtgacggtcggcggc
gtcgtcgtccagaacgccacgctgcacaatgccgaggagatcgagcggctcgacgtgcgg
gtcggcgacacggtgcagatccagcgggccggcgacgtgatcccgcaggtgctcggcatc
gtccccgacaagcggccgaagggcgccaagccgttcgcatttcccgacacctgcccgtgc
gagctgaagacgccggtggtgcgcgaggagacggcgtctggcgcgcagagcgtcgtgcgc
cgctgcaccggcgagttcgcttgcccgttccagcggcgcgagcacctgaagctgttcgtc
tcccgcaaggccttcgacatcgacggcctcggcgagaagcagatcgacctgttctacgac
gacccggactttcgcgtccgcacgcccgccgacatcttcaggatgcgggatcgcgacgcc
gcctcgctgaagaagctgaaggacaaggaaggcttcggcgaggtctcggcccgcaacctg
ttcgaggcgatcgaggcacggcggacgatcgcgctcgaccggctgatcttctcgctgggc
atacggcatgtcggcgaggcgacggcgaagacgctggcccgcgcctatggcagcttcgac
gccttccacgtggcggcgctgaaggtcgccgagggggacgccgaggccgccgccgagatg
gatgcgctggaggatatcggcggggcggtgatcaccgcggtggcgcggttcttctccgag
gagcacaaccgccggctggtcgaggagctggtgcgcgaactcaccatcgagacggtcgag
aagcccgccgcgacttcgccggtttccggccagaccatcgtgttcaccggctcgctggag
cgcatgacccgcgacgaggcgaaggccatggccgaggccctgggggccaaggtggcgggc
tcggtgtcgaagaagaccgatctggtcgtcgccggccccggcgccggctcgaagctcaag
aaggcggcggaattcgaagtcgaggtgatcgacgaggatgcctggttcgagcggatcgga
cggggcggcgaggcgggctga
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