Pukyongia salina: C5O00_10385
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Entry
C5O00_10385 CDS
T05335
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aue
Pukyongia salina
Pathway
aue03030
DNA replication
aue03410
Base excision repair
aue03420
Nucleotide excision repair
aue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C5O00_10385
03410 Base excision repair
C5O00_10385
03420 Nucleotide excision repair
C5O00_10385
03430 Mismatch repair
C5O00_10385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aue03032
]
C5O00_10385
03400 DNA repair and recombination proteins [BR:
aue03400
]
C5O00_10385
Enzymes [BR:
aue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C5O00_10385
DNA replication proteins [BR:
aue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C5O00_10385
DNA repair and recombination proteins [BR:
aue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C5O00_10385
NER (nucleotide excision repair)
GGR (global genome repair) factors
C5O00_10385
MMR (mismatch excision repair)
DNA ligase
C5O00_10385
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C5O00_10385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
Bac_small_YrzI
5_3_exonuc
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AVI51550
UniProt:
A0A2S0HY66
LinkDB
All DBs
Position
2273460..2275454
Genome browser
AA seq
664 aa
AA seq
DB search
MNPEQQIQQLREELREHNYKYYVLDQPVISDYEFDQKLKLLQELEAAHPQYYDANSPTVR
VGGEVTKNFDTVTHEFRMYSLDNSYSREDLLDWEKRIGKLVDGEIKYTCELKYDGASISL
TYEKGKLVRAVTRGDGFQGDDVTTNVKTIKSVPLQLQGDYPDKFEIRGEIVLPFDGFEKM
NLERIDIGEEPYRNPRNTASGSLKLQDSAEVARRPLECLLYNLKGNRLPVSTQFESLEKA
RQWGFKVPDVAKLCNNIDEVLEFINYWDVHRHDLPYETDGVVVKVNDLQQQEELGYTAKA
PRWAIAYKFKAEAAVTVLNEITYQVGRTGAITPVANLDPVELAGTIVKRASLHNADQIAK
LDIREGDTVYVEKGGEIIPKITAVDTSKRKSDSKPTAYIRLCPECNTPLERKEGEAQHYC
PNTSGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVNNGLINNYADLYELTVEQVIPLE
RMAEKSAENLVNGIIASKQIPFERVLFALGIRYVGETVAKKLARHYKSIDALMEASEEAL
VEVDEIGERIAQSVIGFFASEENKQIIRRLKNYGLQLEISAEKLANQTDKLQGSSFVVSG
VFSKVSRTELKKLIEDNGGKVSGSISGKTSYVVAGENMGPSKRVKAEDLGISIISEDEFL
DMIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctgaacagcaaattcaacaacttcgcgaagagctccgtgagcataactataag
tattacgtgctcgatcagcctgtgatttccgattacgaatttgatcaaaagctaaaactg
cttcaggaattggaagctgcgcatcctcaatattacgatgccaattctcctaccgtacga
gtaggcggggaggtgaccaaaaattttgataccgttacgcacgaattcagaatgtactca
ttggataattcgtattccagggaagatctgctggattgggagaagcgaatagggaaatta
gtggatggggaaataaagtatacctgtgagcttaaatacgacggtgcatccataagctta
acatacgaaaaaggcaaattagtacgggctgtgacaagaggtgatggttttcagggagat
gatgtaaccaccaatgttaagaccattaaatcggtgcctttacaattacaaggagattac
cccgataaattcgagataaggggggagatcgtactcccttttgatggtttcgaaaaaatg
aatctggagcggatcgatataggagaagaaccctatagaaatcctaggaacacagcttca
ggtagtttaaagctacaagatagtgccgaggttgcgaggcgtccacttgaatgcctgtta
tataatttaaaagggaatcgccttcctgtgtctacccagttcgagagcctggaaaaggcc
cgtcaatggggtttcaaggtgcctgatgtggcaaaattatgcaacaatattgatgaagtt
ctcgaatttataaattactgggatgtacaccgtcatgatctgccttatgagactgacggg
gtagtggtaaaggtaaacgatcttcaacagcaggaagaattgggttatacagccaaagca
cctcgctgggctatagcatataaatttaaggcagaagctgctgtcactgtcctgaatgaa
ataacctaccaggttggccgtacgggtgcaataaccccggtggcaaatctggatccggta
gaattggccgggaccattgtaaaaagggcttccttgcacaatgccgatcagatagcgaaa
ttggatatacgagaaggcgacaccgtttatgtagaaaaaggaggggagatcatccccaag
atcactgcggttgacacctccaaacgtaaatcagacagtaaaccaacggcctatatccgt
ttatgcccagaatgcaacacaccgctggagcgtaaagagggtgaagcccagcattattgt
ccgaacacatcagggtgcccgccacagatcattggacggatccagcattttatttcgaga
aaagcaatggatattgaagggctgggaggagagacggtggctttactggtaaataacggc
ttgattaacaactatgccgatctttatgagcttacagtggagcaggtgatccctttagaa
agaatggcagagaagagtgcggagaacttggtaaacggaattatagcctcaaagcagatt
ccttttgaacgggtattgtttgccctcggtatccgctacgtgggggaaacggttgctaag
aaactggcaagacactataaatccattgatgcacttatggaggcttcggaagaggcatta
gtagaagtagacgagatcggagagcgaatagcacaaagtgttataggatttttcgcttca
gaagaaaataaacagataatccggcgtttaaagaattacggattgcaacttgaaatatcg
gcagagaaacttgccaaccagacagataaattacagggaagttcttttgttgtaagcgga
gtattttcgaaggtttctcgaaccgaattaaagaagctgatcgaggataatggcgggaag
gtttccggtagtatatcaggtaaaacaagttatgtagtggcgggtgagaacatgggaccc
agtaaacgagtaaaggccgaagatttaggaatatctattatttctgaagatgaatttctg
gatatgatttcctaa
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