Actinomyces urogenitalis: R3I39_06210
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Entry
R3I39_06210 CDS
T09523
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
auo
Actinomyces urogenitalis
Pathway
auo03030
DNA replication
auo03410
Base excision repair
auo03420
Nucleotide excision repair
auo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
auo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3I39_06210 (ligA)
03410 Base excision repair
R3I39_06210 (ligA)
03420 Nucleotide excision repair
R3I39_06210 (ligA)
03430 Mismatch repair
R3I39_06210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auo03032
]
R3I39_06210 (ligA)
03400 DNA repair and recombination proteins [BR:
auo03400
]
R3I39_06210 (ligA)
Enzymes [BR:
auo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R3I39_06210 (ligA)
DNA replication proteins [BR:
auo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R3I39_06210 (ligA)
DNA repair and recombination proteins [BR:
auo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R3I39_06210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R3I39_06210 (ligA)
MMR (mismatch excision repair)
DNA ligase
R3I39_06210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R3I39_06210 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
UPF0758_N
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WOO94312
LinkDB
All DBs
Position
1478814..1481279
Genome browser
AA seq
821 aa
AA seq
DB search
MSTQSTTPAPHGPRDDAEAVPQEARRRWEELAELVERARAAYYDALDAESTTSDAAYDAL
YRELEDLEAAWPQLRVPHSPTRSVGGGRAQAFSPVTHAERMYSLQDVFSLEEVQEWAERV
CADLGVADASLPMTAEVKIDGLAVALTYTDGVLTRAATRGDGTTGEDVTANVRTIASVPH
RLSGDQVPSLIEVRGEVYFPVEAFARFNRERQEDNARREARNRALEEQGGGKRVRKEAML
QVFANPRNAAAGSLRQKDPAITASRPLAFIAHGIGAYTPAPGEQLPALQHEWYELLAGWG
LPVSPYNALVVGRAEREAYIERYAEHRHDLIHEIDGIVFKIDARDQQGRLGYTSRVPRWA
TAYKYPPEEVHTRLLDIDVQVGRTGRVTPFGIMEPVLVAGSTVARATLHNAEEVTRKGVR
IGDLVVLRKAGDVIPEIVGPVVEARDGSERVFVMPAACPSCGTPLAPAKEGDVDLRCPNT
RSCPAQVTERVAHVGSRGALDVEGLGDEAAAALTQPDAGQEEALAALAAGRYLETERGRI
RLRTKDLESLAPAQRLGLARTYLEEHGIGEQEPVLTGEAGLFELSEDDLAEVFVYQSVRR
RGEATGDWRLARFFWTKQTYTPDGDVKKASVPGKNATAVLAQLEAAKAQPLWRVLVALSV
RHVGPTAARALAARFGSLEALRQASLDELSQVDGVGPTIAAAWQEWLEVDWHREILDRWA
AAGVRTQDEVTTTAPQTLAGLSVVVTGTLEHFTREGAKEAIVARGGKAAGSVSKRTSYVV
VGANAGSKETKARELGVPVLDEEGFRALLEHGPAADPEQED
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacccagtccaccacccccgccccgcacggccccagggacgacgcggaggccgtg
ccgcaggaagcccgacgccgctgggaggagctggccgagctcgttgagcgagcacgagcc
gcctactatgacgcgctcgacgccgagtcgacgacctcggacgccgcctatgacgcgttg
taccgtgagctggaggacctggaggcagcctggccgcagctgcgcgtgccccactctccc
acccgtagcgtgggcggaggccgggcgcaggccttctcgccggtgacccacgccgagcgc
atgtactccctgcaggacgtcttcagcctggaggaggtccaggagtgggctgagcgcgtg
tgcgcggacctgggcgtggcagacgcgagcctgcccatgaccgccgaggtcaagattgac
ggcctggcagtggccctgacctacaccgacggcgttctgacgcgggcggccacccgcggg
gacgggaccacgggtgaggacgtcaccgccaacgtccgcaccatcgccagcgtgccccac
aggctcagcggcgaccaggtccccagcctcatcgaggtgcgcggcgaggtctacttcccg
gtcgaggcctttgcgcgcttcaaccgtgagcgccaggaggacaacgcccgccgcgaggcg
cgcaaccgcgccctggaggagcaaggtggcggcaagcgcgtgcgcaaggaggccatgctc
caggtcttcgccaacccgcgtaacgctgccgcaggctccctgcggcagaaggacccggcc
atcaccgcctcgcggccgctggcctttatcgcccacggcatcggggcctacaccccggct
ccgggtgagcagctgccggctctccagcacgagtggtacgagctcctggccgggtggggc
ctgccggtctcgccctacaacgccctcgtcgtcggccgcgccgagcgggaggcctatatc
gagcgctacgccgagcaccgccacgacctgatccacgagatcgacgggatcgtgttcaag
atcgacgcgcgcgatcagcagggcaggctcggatacacctcgcgcgtgccgcgctgggcc
accgcctacaagtacccgccggaggaggtgcacacgcgcctgctcgacatcgacgtgcag
gtggggagaaccggacgagtcacgccctttggcatcatggagccggttctcgtcgccggg
tcgacggtggccagggcgacgctccacaacgccgaggaggtcacgcgcaagggcgtgcgc
atcggtgaccttgtggtcctgcgcaaggctggcgacgtcatccccgagatcgtcgggccg
gtggtcgaggcccgtgacggctccgaacgggtcttcgtcatgccggcggcctgtccctcg
tgcggcacccctctggccccggccaaggagggcgacgtcgacctgcgctgccccaacacc
cgctcctgcccggcgcaggtgaccgagcgcgtggcgcacgtcggctcgcgcggtgccctg
gacgtcgagggcctgggggacgaggctgctgccgccctgacccagcccgacgccgggcaa
gaggaggcgctcgcggcgctggcggccggacgctacctggagacggagcgcggcaggatc
cgtctgaggaccaaggacctggagagcctggcaccggcgcagcgcctgggactggccagg
acgtacctggaggagcacgggatcggcgagcaggagccggtgctcaccggcgaggccggg
ctgttcgagctgagtgaggatgatctggcagaggtcttcgtctaccagagcgtccgacgc
cggggcgaggcgaccggggactggcgcctggcacgcttcttctggaccaagcagacctac
accccggacggcgatgtcaagaaggcgagcgtgcctggcaagaacgccacggcggtcctg
gctcagctggaggccgccaaggcccagccgctgtggcgcgtgctggtggctctgtcggtc
cggcacgtcgggccgacggcggcacgcgccctggcagcccgtttcggatcgctggaggca
ctgcgccaggccagcctcgacgagctcagccaggtcgacggcgtcggcccgacgatcgcg
gccgcctggcaggagtggctggaggtcgactggcaccgcgagatcctggaccggtgggcg
gcggccggggtgcgcacgcaggacgaggtgacgaccacggcgccgcagaccctggccggg
ctgagcgtcgtcgtcaccgggacgctggagcacttcacgcgtgagggggccaaggaggcc
atcgtcgcgcggggaggaaaggctgccggctcggtgtccaagcggaccagctacgtggtc
gtcggcgccaacgccggctccaaggagaccaaggcgcgtgagctgggggtcccggtgctg
gatgaggagggcttccgcgccctgcttgagcacggtccggccgctgaccccgagcaggag
gactga
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