Aerococcus sp. Group 1: HMPREF9243_1961
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Entry
HMPREF9243_1961 CDS
T01447
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aur
Aerococcus sp. Group 1
Pathway
aur03030
DNA replication
aur03410
Base excision repair
aur03420
Nucleotide excision repair
aur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9243_1961 (ligA)
03410 Base excision repair
HMPREF9243_1961 (ligA)
03420 Nucleotide excision repair
HMPREF9243_1961 (ligA)
03430 Mismatch repair
HMPREF9243_1961 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aur03032
]
HMPREF9243_1961 (ligA)
03400 DNA repair and recombination proteins [BR:
aur03400
]
HMPREF9243_1961 (ligA)
Enzymes [BR:
aur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF9243_1961 (ligA)
DNA replication proteins [BR:
aur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF9243_1961 (ligA)
DNA repair and recombination proteins [BR:
aur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF9243_1961 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9243_1961 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF9243_1961 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF9243_1961 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
DASH_Dad4
Motif
Other DBs
NCBI-ProteinID:
AEA01387
UniProt:
F2I8D9
LinkDB
All DBs
Position
complement(1978283..1980316)
Genome browser
AA seq
677 aa
AA seq
DB search
MTKENPAQENQQAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHP
DLIQSDSPTQRVGDVLNEKFDKVHFDQPMLSLGDVFSQEELMAWVGGVQKEFGQDTEFVC
EMKIDGLSVSLLYQDGRLVRGATRGDGNTGENITNNIKTISSIPLRLQEPLSVEVRGEIY
MPKASFAQLNEDREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPADAGI
NSQAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEKVSQIRHDLAYDIDGIVIKVNDFDQ
QEELGYTVKAPRWAIAYKFPAEQAKTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRA
SLHNMDLIRAKDIRLNDKVIIHKAGDIIPEVVSVITEERDADSQAYPEPQTCPICQSDLV
HLEDEVALRCVNPACPAQAKEKLFHFVSRNAMDITGVGPAVITQLYDKAYVKDPSDLYQL
DEATLLTLDKVKEKSAQNILQAIDQSRENSLERLLFGLGIRHVGVKAARDIAMTFGSMEA
IQTADREAISAIDGIGEIIADSVVEYFANDEVIALVNRLSERGVNMTYLGSSPQAIASVD
SFWQGKTVVLTGKLNHYSRQEAKSLIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDL
DILIFDEEEMLSHLEDS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaagaaaatccagctcaggaaaatcaacaagcggtccaggaaagaatggccgca
ttggttgaccagttaaaccagtatgcccatgagtactatgtcttagaccagcctagcgtc
agtgatgaccactatgacaagacctaccgccaactggaagaactggaagccagtcatcct
gacttgatccaaagtgactcgcctacccaacgtgtcggagatgtcttaaatgagaaattt
gataaggtccacttcgaccagcccatgttgtccttgggcgatgtttttagccaggaagaa
ctaatggcctgggtaggcggcgtccaaaaagaatttggtcaggataccgaatttgtctgt
gaaatgaaaattgacggcctctcggtttctctcctttaccaagacggacgcttggtcaga
ggagccacccgaggggacggcaataccggggaaaacattaccaataatattaaaaccatt
tcctccatcccgctgcgtttgcaagaacccctaagtgtggaagttcgtggggaaatttat
atgcctaaggcttcctttgcccaattgaacgaggaccgggaggccgctggtttagccact
tttgctaacccgcgtaactcagcagcgggttcggtccgccaattagaccccaaagtgacc
gccaagaggaatctgaatgtctttctctatactggcgtcttacctgccgatgcggggata
aatagtcaagcggaactgttgaccagctaccctcaatgggggctgcgggttaatccggaa
tttaagctgacccatagtaaggaagaaatttgggactatgtggaaaaggttagccaaatc
cgccatgacctcgcctatgatattgatgggattgtcatcaaggtcaacgacttcgaccaa
caagaggaactgggctataccgtcaaggcaccgcgctgggccattgcctataagttccca
gcagaacaggctaaaaccactattcgtgatatcgagtggaccgtggggcggaccggggta
gtgaccccgactgcggtcatggatccggtcttagtggcaggaagtaccgtccagagggct
tccctccataatatggatttgatccgggccaaggatatccgactcaatgataaggtcatt
atccataaggccggtgacattatcccagaagttgtcagtgtgattactgaagaaagagac
gctgatagtcaagcctatccagaaccccagacctgtcctatctgccagagtgacctggtc
catttagaagatgaagtcgccctccgctgtgtcaatcctgcctgtccggcccaagccaag
gagaaactcttccactttgtttcccgcaacgccatggatatcaccggagttggtcctgcg
gtgattactcaattgtatgacaaggcctatgtcaaagatcccagtgacctctaccaatta
gatgaagcgacgctcttgaccttggacaaggttaaggaaaaatcggcccaaaatatcttg
caggccatcgatcaaagccgggaaaattccttggaacggctcctctttggcttaggtatc
cgccatgttggtgtcaaggcggcccgcgacattgccatgacctttggctccatggaagct
atccaaaccgctgaccgggaggccatttcagccattgatgggatcggtgaaattattgct
gacagtgtggtggaatattttgccaatgatgaagtgattgccctagtcaaccggctcagt
gagcggggggttaatatgacctacctagggtctagtccgcaagccatagctagtgtagat
tccttctggcaagggaaaaccgtggtattaactggaaaactcaaccactatagccggcaa
gaagccaagagccttattgaaggccaaggcggaaaagtcaccggatcagtctccaagaat
accgatgtggtcgtcgccggtgaagatgccggcagtaaattgaccaaggcccaagattta
gatattttaatttttgatgaagaagagatgttgagtcacctagaagattcctag
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