Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2: IPK37_01350
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Entry
IPK37_01350 CDS
T07017
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aus
Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2
Pathway
aus03030
DNA replication
aus03410
Base excision repair
aus03420
Nucleotide excision repair
aus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPK37_01350 (ligA)
03410 Base excision repair
IPK37_01350 (ligA)
03420 Nucleotide excision repair
IPK37_01350 (ligA)
03430 Mismatch repair
IPK37_01350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aus03032
]
IPK37_01350 (ligA)
03400 DNA repair and recombination proteins [BR:
aus03400
]
IPK37_01350 (ligA)
Enzymes [BR:
aus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IPK37_01350 (ligA)
DNA replication proteins [BR:
aus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IPK37_01350 (ligA)
DNA repair and recombination proteins [BR:
aus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IPK37_01350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IPK37_01350 (ligA)
MMR (mismatch excision repair)
DNA ligase
IPK37_01350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IPK37_01350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QQS01160
LinkDB
All DBs
Position
complement(282366..284618)
Genome browser
AA seq
750 aa
AA seq
DB search
MRQDGPVTATRPPASAPDGDELPVAPPPESRAAATGEAAPQEAPDASRHEWAELAEEIRA
HQFAYYVRQSPTIADGEYDALLRRLEALEERYPDLRTPDSPTQTVGGTFSTDFAAVDHVE
RMMSLDNVFSPAELTEWAERVERGAGGAELHWLTELKIDGLAINLLYEDGRLVRALTRGD
GRTGEDVTMNVRTIDGIPHQLAASEEHPVPELIEIRGEIFFPVAAFAQLNESLVAAGRPP
FANPRNAASGSLRQKDPRVTATRPLRMLVHGIGARRGFEVARQSEAYAAFAAWGLPTSDA
VQVLDDMAAVQARIDYFGEHRHSVEHELDGLVVKVDEVAVQRRLGSTSRAPRWAIAYKYP
PEEVTTKLLDIRVNVGRTGRVTPYGVMEPVKVSGSTVSMATLHNAFEVERKGVLVGDSVV
LRKAGDVIPEIVGPVVDLRDGTQRPFVMPTHCPSCGAELAYEKEGDKDIRCPNARSCPSQ
LRERVFGLAGRGGFDIEALGWEGAIALLEAGVLTDEAGLFELTPADIARVPLYTRAAKKT
ELADPDAVPEPGVLDGRVLSANGARLVANLASAKTQPLWRVLVALSIRHVGPTAARALAA
HFGSMTAVRAATREELAAVEGVGPVIADAVLEWFDVDWHREIVDRWAAAGVRMADERDAS
LEQTLAGLTVVVTGSLQGFSRDESKEAILARGGKAAGSVSKKTDYVVVGENAGTKADKAE
QLGVPILTEEQFVALLAGGPGALPGSPVPE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcaggatgggcccgtgaccgcgacccgccctcccgccagcgcccccgacggcgac
gagctcccggtggcaccgccccccgagtcccgcgccgcggccaccggcgaggccgcgccg
caggaggcgcccgacgcttcgcggcacgagtgggccgagctggccgaggagattcgcgcc
caccagttcgcctactacgtgcggcaatcgcccacgatcgccgacggggagtacgacgcc
ctgctgcgccgactggaggccctggaggagcgctaccccgacctgcgcaccccggacagc
ccgacccagacggtcgggggcacgttctccaccgacttcgccgccgtcgaccacgtcgag
cggatgatgagtctggataacgtgttcagcccggccgagttgacggagtgggccgagcgc
gtcgagcgcggcgccggcggggcggagctgcactggctgaccgagctgaagatcgacggc
ctggccatcaacctgctctacgaggacggccgcctcgtccgcgccctcacccgcggcgac
ggccgcaccggcgaggacgtcacgatgaacgtccgcaccatcgacggcatcccgcaccag
ctcgccgcctccgaagagcacccggtgcccgagctgatcgagatccgcggcgagatcttc
ttcccggtcgccgcgttcgcgcagctcaacgagtccctggtggcggcggggcgaccgccg
ttcgcgaacccgcgcaacgccgcctccgggtcgctgcgccagaaggacccccgggtcacc
gcgacgcggccgctgcggatgctcgtgcacggcatcggggcccggcgcgggttcgaggtg
gcgcggcagagcgaggcctacgccgcgttcgccgcctggggcctgcccaccagcgacgcc
gtccaggtgctcgacgacatggccgcggtgcaggcgcgcatcgactacttcggcgagcat
cggcactccgtcgagcacgagctggacggcctggtggtcaaggtggacgaggtcgccgtc
cagcggcggctcgggtcgacctcgcgagccccgcggtgggcgatcgcgtacaagtacccg
cccgaggaggtcaccaccaagctcctcgacatccgcgtcaacgtcgggcgaacgggacgc
gtcacgccgtacggcgtgatggagcccgtcaaggtgtccggttcgaccgtgtccatggcg
accctgcacaacgccttcgaggtggagcgcaaaggcgtcctcgtcggggactccgtcgtg
ctgcgcaaggccggcgacgtcatccccgagatcgtcgggcccgtcgtggacctgcgcgac
gggacgcagcggccgttcgtcatgccgacgcactgcccgtcctgcggggcggagctggcg
tatgagaaggagggcgacaaggacatccgctgccccaacgcccgctcgtgccccagccag
ctgcgcgaacgggtcttcgggttggccgggcgcggggggttcgacatcgaggccctcggc
tgggagggcgccatcgcgctcctggaagccggggtgctgaccgacgaggcgggcctgttc
gagctgaccccggcggacatcgcgcgggtgccgctctacacgcgcgccgcgaagaagacc
gaactcgccgacccggacgcggtgcccgagccgggcgtcctcgacgggcgggtgctctcg
gccaatggcgcacgcctcgtggccaacctggccagcgcgaaaacccagccactctggcgc
gtcctcgtcgcgctgtcgatccgccacgtcgggccgaccgccgcccgcgccctcgccgcg
cacttcggctcgatgaccgccgtccgggcggcgacgcgtgaggagctggccgctgtcgag
ggcgtcggcccggtcatcgccgacgcggtcctggagtggttcgacgtcgactggcaccgc
gagatcgtggaccgctgggcggccgcgggggtgcggatggccgacgagcgcgacgcctcc
ctcgaacagaccctggccgggctcaccgtggtcgtcaccggctcgctgcagggcttctcg
cgcgacgagtccaaggaggccatcctcgcccgcggcgggaaggccgccgggtcggtgagc
aagaagaccgactacgtggtggtgggggagaatgccgggaccaaggccgacaaggccgag
cagctcggggtgccgatcctgaccgaggagcagttcgtggcactcctcgcaggtgggccg
ggcgccctgccgggttcgccggtgccagaatga
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