Aurantimicrobium sp. INA4: AINA4_05610
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Entry
AINA4_05610 CDS
T10136
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aut Aurantimicrobium sp. INA4
Pathway
aut03030
DNA replication
aut03410
Base excision repair
aut03420
Nucleotide excision repair
aut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AINA4_05610 (ligA1)
03410 Base excision repair
AINA4_05610 (ligA1)
03420 Nucleotide excision repair
AINA4_05610 (ligA1)
03430 Mismatch repair
AINA4_05610 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aut03032
]
AINA4_05610 (ligA1)
03400 DNA repair and recombination proteins [BR:
aut03400
]
AINA4_05610 (ligA1)
Enzymes [BR:
aut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AINA4_05610 (ligA1)
DNA replication proteins [BR:
aut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AINA4_05610 (ligA1)
DNA repair and recombination proteins [BR:
aut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AINA4_05610 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AINA4_05610 (ligA1)
MMR (mismatch excision repair)
DNA ligase
AINA4_05610 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AINA4_05610 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BDU10640
LinkDB
All DBs
Position
564322..566457
Genome browser
AA seq
711 aa
AA seq
DB search
MSGDALFGDDLEIVTEPSDFEKAQHEAEELTSKILDARDAYYERDESLIADVEYDALIHR
LEEIEREYPELQGQDSPTLSVGGKVTELFAPVTHAARMMSLDNVFSEEQFMDWAARIRKD
TGREVNYLCELKIDGLAINLRYENGVLISAATRGDGVVGEDVTANVLTIKSIPTRLAGQG
HPALVEVRGEIFFPVEAFRKLNVELAQAGEKVFANPRNAASGSLRQKDPEKTATRPLSML
VHGIGAWENAPVPTQSEVYELLKSWGLPTSSHYRVVSSAQEAAGFIREMGAARDSVEHEI
DGIVIKVDDMATQRELGSTSRAPRWAIAYKYPPEQVNTKLVDIRVSVGRTGRATPFAVVE
PVKVAGSTVEFATLHNQDVVKAKGVLIGDTIVIRKAGDVIPEVLGPVLELRNGTERAFVM
PEGCPECGAKLAPASEGDIDLRCPNQKSCPAQVRGRVEHIGSRGGLDIEGLGEVAATALT
NHKDGEQPPLETEANLFALTLEDLKKVPYFVNADGSESKNAVELIANLELAKTKPLWRLL
VSLNIRHVGPVAARALANHFGSLDAIRTASIDELAAVDGVGTIIAESLKNWSEVDWHQDI
IEQWKAAGVQFEIPGHAGPGAVAEIDGPCSGLTIVATGSLEGFTREGAQEAIIAAGGKPA
SSVSKKTDFVAAGPGAGSKLTKAEELGIPVLDAEGFKKLLAEGPSAFRSVD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggacgctttgtttggtgatgatttagaaatcgttactgaacccagcgacttc
gagaaagctcaacacgaagccgaagagctgacctccaaaatcttggatgctcgtgatgcc
tattacgagcgagacgaaagtctgattgctgacgttgaatacgacgcactgattcaccgt
ctcgaagaaatcgagcgcgaatatcccgagcttcagggacaagacagccccacattgtct
gttggtgggaaggttacagagctttttgctcccgtcacccacgccgcacgaatgatgagc
ctggacaatgtcttttcggaagaacagttcatggactgggcggcacgaattagaaaagac
acagggcgtgaggtcaactatctctgcgagctgaagatagatggcttggccatcaacctt
cgctatgaaaacggtgtgctcatttctgctgcaacccgtggtgatggtgttgttggagaa
gatgtcactgcgaatgtactgacgatcaagtccattcccacgcgtcttgccggccaaggg
cacccggcactggtcgaagtgcgcggggaaatcttctttcccgtagaagcattccgaaaa
ttgaatgtggaattagctcaagctggagagaaagtctttgctaacccgcgtaacgccgcc
agtgggtccctgaggcaaaaagacccagaaaaaacagctacccgtccactgagcatgctg
gtgcacggtattggtgcgtgggaaaacgcacccgtccccacacagtcagaggtgtatgaa
ctcctcaagagttggggattacctacctcaagccactatcgagttgttagctccgcacaa
gaggcggccggcttcatccgagagatgggtgcagctcgcgattctgtagagcatgaaata
gacggcattgtcattaaggtcgatgacatggccactcagcgtgagctgggatccacttct
cgtgcgccacgttgggctatcgcctacaaatacccaccagagcaggtcaacaccaagctg
gtagacatccgtgtcagtgttggacgcaccggacgggccacgccctttgcggtcgtcgag
cccgttaaagttgccggctccaccgtagagttcgctactcttcacaaccaagacgtggtc
aaggccaagggtgtgctcatcggtgacaccatcgtcatccgcaaggcaggcgatgttatt
cctgaagtcctcggccctgtgctggaactgcgtaatggcactgagcgtgcgttcgtgatg
ccggaaggttgccctgagtgtggtgcgaagctcgcacctgcttctgagggggacattgac
ttgcggtgccctaaccaaaagagctgccctgcccaggttcgtggacgggtagaacacatc
ggttcacgtggcggtctggatattgaaggcctcggcgaagttgccgccaccgcactcaca
aaccataaagatggcgaacagcctccgcttgaaaccgaagccaacctgtttgcgttgacc
ttagaagatctcaaaaaagttccctacttcgtcaatgctgatggctctgaatccaaaaac
gcggtggaactcattgcgaacctggaactggcaaagacaaaaccactctggcgtttgctg
gtctctctcaacattcgccacgtaggcccagtagcagcaagagcactggcaaatcacttc
ggttctcttgatgccatccgtactgcctccatcgatgagcttgcagcagttgatggtgtg
ggaacaatcattgctgagtcgttgaagaattggtccgaggttgactggcatcaggacatc
attgagcaatggaaggcagcaggtgttcagtttgaaatccctggacatgcgggccctgga
gcggttgcagagattgatggcccctgttctggactaacaatcgttgccacaggttctctc
gagggattcactcgcgagggagctcaggaagcaatcattgctgcgggtggcaagcccgca
tcgagtgtgtcgaaaaagacagactttgttgctgcaggaccaggagcgggttcgaagctc
actaaggctgaagaactgggtattcctgttcttgatgctgaagggttcaagaagctgctt
gccgaaggtcccagtgcctttcgctcggtagactaa
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