Actinotignum urinale: CJ184_001455
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Entry
CJ184_001455 CDS
T09101
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
auu
Actinotignum urinale
Pathway
auu03030
DNA replication
auu03410
Base excision repair
auu03420
Nucleotide excision repair
auu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
auu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJ184_001455 (ligA)
03410 Base excision repair
CJ184_001455 (ligA)
03420 Nucleotide excision repair
CJ184_001455 (ligA)
03430 Mismatch repair
CJ184_001455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auu03032
]
CJ184_001455 (ligA)
03400 DNA repair and recombination proteins [BR:
auu03400
]
CJ184_001455 (ligA)
Enzymes [BR:
auu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJ184_001455 (ligA)
DNA replication proteins [BR:
auu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJ184_001455 (ligA)
DNA repair and recombination proteins [BR:
auu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJ184_001455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJ184_001455 (ligA)
MMR (mismatch excision repair)
DNA ligase
CJ184_001455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJ184_001455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Not3
CALCOCO1
Golgin_A5
COG6_N
Motif
Other DBs
NCBI-ProteinID:
WIK59343
LinkDB
All DBs
Position
complement(344207..347149)
Genome browser
AA seq
980 aa
AA seq
DB search
MSTSPHAMDTVENLYETIDGVSDKSSVSGTLFSFDDVSGQIVDVSGQIVGNTGQDNSTDA
KKEEVNHHDLAARYKNIVSTYSKEHARKRVDELTPQIRTAQLLYTNTAEYGIDDNEYDKL
RHELSAIEARFPEFEAKDSPTHTVGAPIDPNAKAVEHIERLYSLQDVFSYDELRDWYDGV
ARQVGQGAVYTAEAKIDGLALNLRYVNGHLDVAATRGDGVTGEDVTANVAYISVIPQNLS
GSTIPEVVEIRGEVFMPLKEFKPFNEGQKKIKADLEDQLHQLHSRIEKLRSDIENIDEER
RKDKRTKKEMPLDEYQTLAKRRKEMKAKKGAISEELKELRAKAKSVLGEISSIRIFANPR
NAAAGSLRQKDPRVTGQRPLSFIAHGIGALNGVSDELAKRLGTQEGFYRQCREWGMPVSP
YTQDVTTWEEIRDFVEKIGEKRKDLEYGTDGSVIKVNNREDQEKLGYTSRVPRWAVAFKY
PPEKVETRLLDIQVGIGRTGRATPYAVLEPVFVDGSEIQRATLHNQFEIQRKNLMINDIV
ILHKAGDIIPQIVEPVVDKRDGMQRVWNMPKACPTCGTQLAPAQEKDLDYRCPNQKSCPA
QLVERITHIGSRKALDVDGMGEKTALMLSNPDANRRDALMALATGGVLFLPDDNGRGFRR
LRLTTEQAIDCGIIDDDGGIVDSQAIIPEIICEQLGIPSPQKPLLETEAALFDVTEESLR
DVFSWSPFTQKSGGIVVAQGYKYARVAWTTSSQKNEEIAPTLNTRAFLENLNRAKTQPLW
RKLVALSIRHVGHTVARSLADEYSSLDYIRNASVEDLGAIEGISSVIATSIKEWFDEDWH
EDIIAQWQKAGVTFSDVPAEEGGSVLDVSGVHGAHGAPGANADVTQAGLTGVGARETVPQ
TLAGMSIVATGSLENYTRDGVGETIRMYGGKSRSSVSKSTTLVVAGEKAGSKLQKAEKLG
IPILDEVQFEELLRTGIIPG
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatcgcctcacgctatggacaccgtcgaaaatctatatgagacaatagatggc
gtgagtgataaatcttcagtttcaggtaccctattttctttcgacgacgttagtgggcag
attgtagacgttagtgggcagattgtaggcaatactgggcaagataattctacggacgcg
aaaaaagaggaagtgaatcaccatgatcttgccgcgcgatacaagaatatcgtctctaca
tattcgaaagaacacgcccgcaagcgcgtcgacgagttaacgccacaaatacgcaccgct
caacttttgtacaccaatacggcagagtacggtatagacgataacgaatacgacaaactt
cgccacgaattgagcgccattgaagcgcgtttccccgagttcgaggccaaagattcaccc
actcacacggttggcgcgcctattgacccgaacgctaaagccgtcgaacatattgaacgc
ctttattctctccaagacgttttttcctacgacgaattacgggactggtacgacggtgtt
gcccggcaggttgggcaaggcgccgtttacactgcggaagcaaaaatcgatggattggcg
ttaaatcttcgatatgtgaacgggcatttagatgttgcggccacgcgaggcgatggggta
accggcgaggacgttaccgcaaatgttgcctatattagcgttattcctcaaaatctttcc
ggttccacaatcccggaagttgtggaaattcgcggtgaagtgtttatgccactcaaagaa
tttaagccttttaacgaagggcaaaaaaagataaaggcagatttagaagatcagctccat
caactccattcacgtatcgagaaactccggagcgatatcgaaaatattgacgaagaacga
cgcaaagacaaacgcaccaaaaaagaaatgccacttgacgaatatcagacgctggcaaaa
agacgaaaagagatgaaagctaagaaaggcgccatctcggaagaattaaaggaacttcgc
gcaaaagcaaaaagtgtgcttggcgagatctcaagcattcgcatattcgctaacccccgc
aatgccgctgccggatccctgcgccaaaaagacccccgagttaccgggcaacgtccacta
tcttttatcgctcacggaatcggggcgcttaacggggtcagtgatgaactagccaaacgc
cttggaacccaagaaggtttctatcggcaatgccgtgagtggggtatgcccgtttcccct
tacacccaggacgtcaccacgtgggaagagatacgcgatttcgtcgaaaaaataggggag
aagaggaaagacctcgaatatggcacagacggatcggttattaaagtcaacaaccgagaa
gatcaggaaaaacttggatacacctcgcgcgtgccacgctgggctgttgctttcaaatat
ccaccggaaaaagtggaaacaaggcttctcgatattcaggtgggaatagggcgaaccggg
cgcgcaacaccctatgccgtattggaacccgtttttgtggacggtagcgaaatccagcgg
gcaacccttcacaaccagttcgaaattcaacgtaaaaacctcatgattaacgacatcgtt
attttgcacaaagccggggatattattccccaaattgttgagcctgttgtggacaagcgt
gatggaatgcaacgagtctggaatatgcccaaggcgtgccccacgtgtggaacacagctt
gcgccagcccaggaaaaagacctggattaccgttgccccaatcaaaaatcctgccctgca
cagctcgtcgaacgcatcacccacattggttcacgcaaggcgcttgacgtggacgggatg
ggtgaaaaaaccgcgctcatgctgtccaatccggacgcaaaccggcgcgatgccctcatg
gcactcgcaacaggtggcgtacttttccttcccgatgataacggacgcggttttcgtcgt
ctccgcttaacaaccgaacaagcgatagactgcggaattattgatgacgacggcggcatt
gttgacagccaagctattattcctgaaataatctgcgaacagctgggtatacccagcccg
caaaagccgcttcttgaaacggaagccgcgttgtttgacgtgacagaagaatccctacgc
gacgtcttttcatggtcgccctttacgcagaagtctggcggaatcgtcgtggcacaagga
tacaagtatgcgcgtgtagcgtggacgacgtcttcgcaaaaaaatgaggaaatagcccca
acgttaaatacccgcgcatttttggagaacctcaaccgagcaaaaacgcaaccgctgtgg
cgaaaacttgttgcgctatctatacgccatgttggccataccgtggcacgcagtttagct
gacgaatattccagcctcgactacatccgcaacgcgagcgtggaagacctcggcgcaata
gaaggaatcagtagcgttattgccacatcgattaaagagtggttcgacgaggactggcac
gaggacattattgcacaatggcagaaagcgggcgttacctttagtgatgtgccagcagaa
gaaggcggtagcgtacttgatgtttctggcgtgcacggcgctcatggcgcgcccggcgcg
aacgcagatgtcacgcaggccggtttaaccggtgtgggcgctcgcgaaacggttcctcaa
actctggcgggaatgtccattgttgctacgggttctctagagaactacacgcgcgacggc
gtgggcgaaactatccgtatgtatggcgggaaatcgcgttcttcggtcagtaaaagcaca
acacttgttgttgcgggagagaaggctggttccaagctacaaaaagccgaaaagctgggt
atacccatccttgacgaagtccaatttgaagaacttttacgcaccggaattattcccggt
taa
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