Aurantimicrobium sp. MWH-Uga1: AURUGA1_00588
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Entry
AURUGA1_00588 CDS
T05539
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
auw
Aurantimicrobium sp. MWH-Uga1
Pathway
auw03030
DNA replication
auw03410
Base excision repair
auw03420
Nucleotide excision repair
auw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
auw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AURUGA1_00588 (ligA_2)
03410 Base excision repair
AURUGA1_00588 (ligA_2)
03420 Nucleotide excision repair
AURUGA1_00588 (ligA_2)
03430 Mismatch repair
AURUGA1_00588 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
auw03032
]
AURUGA1_00588 (ligA_2)
03400 DNA repair and recombination proteins [BR:
auw03400
]
AURUGA1_00588 (ligA_2)
Enzymes [BR:
auw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AURUGA1_00588 (ligA_2)
DNA replication proteins [BR:
auw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AURUGA1_00588 (ligA_2)
DNA repair and recombination proteins [BR:
auw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AURUGA1_00588 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AURUGA1_00588 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
AURUGA1_00588 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AURUGA1_00588 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
AXE54295
LinkDB
All DBs
Position
562245..564368
Genome browser
AA seq
707 aa
AA seq
DB search
MSGDALFGDDLEIVPELSDFEKAQHEAEELTSKILDARDAYYERDESLIADVEYDALIHR
LEEIEALYPELQGQDSPTLSVGGKATELFAPVTHAARMMSLDNVFSEEQFMDWAARIKKD
TGREVSYLCELKIDGLAINLRYENGVLVSAATRGDGVVGEDVTANVLTIKSIPTRLAGQG
HPALVEVRGEIFFPVEAFRKLNVELAQAGEKVFANPRNAASGSLRQKDPEKTATRPLAML
VHGIGAWEDAPVPTQSEVYALLKSWGLPTSTHYRVVNSAADAAAFIREMGAARDSVEHEI
DGIVVKVDDMATQRELGATSRAPRWAIAYKYPPEQVNTKLVDIRVSVGRTGRATPYAVVE
PIKVAGSTVEFATLHNQDVVKAKGVLIGDTIVIRKAGDVIPEVLGPVIELRNGTERAFVM
PEGCPECGAQLAPASEGDIDLRCPNQKSCPAQVRGRVEHIGSRGGLDIEGLGEVAATALT
NHKDGEQPPLETEANLFALTLEDLKKVPYFVNADGTESKNAVELIANLELAKTKPLWRLL
VSLNIRHVGPVAARALANHFGSLDAIRAATIDELAAVDGVGTIIAESLKNWFEVDWHQDI
IQQWKAAGVQFEIPGHAGPGAVADIDGPCSGLTIVATGSLEGFSREGAQEAIIAAGGKPA
SSVSKKTDFVAAGPGAGSKLTKAEELGIPVLDAAGFKRLLEGGPAAV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggatgcgttgttcggtgatgatttagaaatcgttccagaacttagtgacttt
gaaaaggcacaacacgaagccgaagagctcacttccaaaatcttggatgcccgtgatgcc
tattacgagcgagacgaaagcctaatagcggacgtcgaatacgacgcactgattcaccgt
ctcgaagaaatcgaggctctctatccagagctccagggccaagacagccccacgctctcc
gtgggagggaaagcaactgaactctttgcccctgtaacccacgcagcgcgcatgatgagt
ctggacaatgtcttctccgaagaacagttcatggactgggctgcgcgcatcaagaaagac
accgggcgtgaggtcagctacctctgtgagctgaagatagatggcttggccatcaacctt
cgttatgaaaacggtgtgctcgtttctgctgcaacccgaggtgatggtgttgttggagaa
gatgtcactgcaaatgtgttgacgatcaagtccattcccacgcgtcttgccgggcaaggg
caccctgcactggtggaagttcgtggggagatcttcttcccggttgaagcgttcaggaaa
ctcaacgttgaacttgcacaggcaggagagaaggtttttgctaaccctcgcaatgcagcc
agtggttcattacggcagaaagatccggaaaagaccgccacacgcccactagcaatgctg
gtgcacggtattggcgcgtgggaagacgcacctgttcccacccagtctgaagtgtatgca
ctcttgaagagttggggactacccacttcaacccactatcgcgtggtgaattcagcagca
gatgctgctgccttcattcgtgaaatgggcgcagccagggattctgttgagcacgaaatt
gacggcattgtggtcaaagtcgatgacatggccacccagcgtgagctgggtgccacctct
cgagcacctcgttgggctattgcttacaaatatccaccagaacaggtcaacaccaaactg
gttgatattcgagtcagtgtgggtcgcaccgggcgggccacgccctatgcggtcgtcgag
cccatcaaagtagctggctccactgttgagttcgccaccctccataaccaagacgtcgtc
aaagccaagggtgtactcatcggtgacactatcgtcatccgcaaagcaggagatgtcatc
cctgaggttctcggccccgtcatcgaactccgtaatggcacggaacgtgccttcgtcatg
ccggaagggtgccctgagtgtggcgcacaactcgcacctgcatctgaaggtgacattgat
ctgcggtgccccaaccagaagagttgtcccgcccaggttcgtggccgtgtggaacacatc
ggttcacgaggtggcctcgacattgaaggtcttggtgaagttgctgccacggcactgacc
aaccacaaggatggcgaacagccaccgctagaaaccgaagccaacctgtttgcgttgacc
ctagaagatctcaaaaaagttccctacttcgtcaacgctgacggcacagagtctaagaac
gcggttgaactcatcgccaacctcgagctagccaagaccaagccactgtggcgtttgcta
gtttcgctcaatattcgccacgtgggacctgttgcagcgcgagcactggcaaaccacttc
ggttcactggatgccattcgcgcagccactatcgacgagctggctgctgtcgatggcgta
ggaaccatcattgctgagtcgctgaagaactggttcgaggttgactggcatcaggacatc
atccagcaatggaaggcagctggtgttcagtttgaaattccaggacatgcgggccctgga
gcggttgcagatatcgatggcccttgttcaggtttgaccatcgttgctacaggttctctc
gagggattttcccgtgaaggtgcacaagaagccatcattgctgctggcggtaagccagca
tcgagcgtgtcaaagaagacagactttgtcgctgccggcccaggggcaggatctaagctc
acgaaggccgaagagctgggcataccagtgctggatgctgcaggtttcaagagactgtta
gaaggcggcccggcagcggtctag
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