Acinetobacter variabilis: RYU24_24150
Help
Entry
RYU24_24150 CDS
T07586
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avb
Acinetobacter variabilis
Pathway
avb03030
DNA replication
avb03410
Base excision repair
avb03420
Nucleotide excision repair
avb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RYU24_24150 (ligA_1)
03410 Base excision repair
RYU24_24150 (ligA_1)
03420 Nucleotide excision repair
RYU24_24150 (ligA_1)
03430 Mismatch repair
RYU24_24150 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avb03032
]
RYU24_24150 (ligA_1)
03400 DNA repair and recombination proteins [BR:
avb03400
]
RYU24_24150 (ligA_1)
Enzymes [BR:
avb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RYU24_24150 (ligA_1)
DNA replication proteins [BR:
avb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RYU24_24150 (ligA_1)
DNA repair and recombination proteins [BR:
avb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RYU24_24150 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RYU24_24150 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
RYU24_24150 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RYU24_24150 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
RNA_lig_T4_1
GFRP
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BCT90010
LinkDB
All DBs
Position
complement(2529839..2531878)
Genome browser
AA seq
679 aa
AA seq
DB search
MTQDATVIAQMRQLIQLIAKHNHAYYVMDQPTIEDSEYDQLFHQLKALEEQYPHLQQPDT
PTVKVGGQALSKFLTVTHAVPMLSLGNVFNQDDLFAFARRIEERLPNQKIEYDVELKFDG
LAISLWYEHGVLVRGVTRGDGETGEDITQNVKTIRNLPKFLSPVNGVIPELLEVRGEVLM
PKSGFERLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPHHGQ
TTMSGSLEWLQQFGFAVGERHFICSSIQEVQKVYEQIIEERSKLSVEIDGMVIKVNDLKQ
QQKLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPADAVEVYLPENCPVCGSPVV
MPEGEALARCSGELYCAAQRIETIRHFVSRKAMDIEGLGDRWVESLLHLNLLRDVSDIYH
LHEHREQLLQIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
LDALRSADVDALKKTPDVGDITAEWIVDFFQAPHNLEVLDRLLAAGIHWDAPIAPTRQPL
NGESWVVTGTLSSMGRDEATQLLQALGARVSGSVSSKTKCVVVGEKAGSKLDKAEKLGVP
VINEAQFIALMKEYGQIEE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagatgccactgtcattgcgcaaatgcgtcaattgattcaactgattgccaag
cataatcatgcttattatgtgatggatcaacctactattgaagacagtgaatatgatcag
ctctttcatcagctcaaagctttagaagaacaatatccacatttacaacagccagacaca
ccgacagttaaagtaggcggtcaggcactttccaaatttctgaccgtaacgcatgcggtg
ccaatgctgtctttaggcaacgtgtttaatcaggatgatctgtttgctttcgcacgccgt
attgaagagcgtttacccaatcaaaagattgaatacgatgttgagctgaaatttgacggt
ctggcaatttccctctggtatgaacatggcgtactggttcgtggtgtcactcgcggtgat
ggggaaactggcgaagatattacccagaatgtcaaaaccattcgtaatctgccgaaattt
ctgtctccagtgaatggcgtgattccagaattactggaagtgcgaggcgaagtgctgatg
ccgaaatccggctttgaacgtctgaatgcggccaatgcagcgaaaggcgaaaaaactttt
gccaatccacgtaacgctgcggccggcagtttacgccagcttgatccgaatattgcagct
tctaggcctttggctttctatgcttatggaattgcccagtgtgtaccacatcatggtcaa
accacaatgtcaggcagtctggaatggctacagcaatttggctttgctgttggtgagcgg
cattttatctgcagtagcatccaggaagtgcaaaaagtttacgagcagatcattgaagaa
cgttcaaagcttagtgtcgaaatcgatggtatggtcattaaggtcaatgacctgaaacag
caacaaaaactgggtttcttgagccgtgaaccacgttgggcaaccgcttataaattcccg
gcagtggcggcattgaccaccgttgaaaatattgactggcaagtgggccgtaccggaacg
ttgacccctgtggcacgtttaaatccggttgccgtgggcggtgtgacggtttccaatgtg
accctgcataatattggtgaaattcaccgtctggatgtaagaatcggggataccgtcagt
gtctatcgtagtggtgacgtgattcctaaggttgaaaaagtctggccagaatttcgtcct
gccgatgcggtagaagtgtatttacctgagaactgtccggtgtgtggttctccagtcgtc
atgccggaaggtgaagcactggcacgttgttcaggtgaactgtattgtgcggcgcagcgc
atcgaaaccatccgtcactttgtttcacgtaaggctatggatatcgaaggtctgggcgat
cgctgggtggagtcactgttacatctcaatcttttaagagatgtctcggatatttatcac
ttgcatgagcatcgtgagcaattactgcaaatcgagaaaatgggtgaaaagtccgttcag
aatctcattgattcgattgagaacagcaagaaaactacattggcagcgtttatttatgcg
ctcgggattcgtggcgtaggtgaaacgacagcacgtatgctggccaatactttccagact
ctcgacgctttacgtagtgctgatgtagacgctttaaagaaaacaccggatgttggtgat
attaccgcagagtggattgttgatttcttccaggcaccgcataacctggaagtattggat
cgcttgttggctgccggtattcattgggatgcgccaattgcaccaacgcgccaaccactg
aatggtgaaagctgggtagtgactggaactttaagttctatgggacgtgatgaagcaaca
caactgttgcaagctttaggtgcacgggtcagtggcagtgtatcgagtaaaaccaaatgt
gtggtggtgggtgaaaaagcgggttctaagctcgataaagcagaaaaactcggtgtgccc
gtgatcaatgaagcgcaatttattgctttgatgaaagagtatgggcaaatcgaagaataa
DBGET
integrated database retrieval system
