Actinomyces viscosus: NCTC10951_00231
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Entry
NCTC10951_00231 CDS
T06789
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avc
Actinomyces viscosus
Pathway
avc03030
DNA replication
avc03410
Base excision repair
avc03420
Nucleotide excision repair
avc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10951_00231 (ligA)
03410 Base excision repair
NCTC10951_00231 (ligA)
03420 Nucleotide excision repair
NCTC10951_00231 (ligA)
03430 Mismatch repair
NCTC10951_00231 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avc03032
]
NCTC10951_00231 (ligA)
03400 DNA repair and recombination proteins [BR:
avc03400
]
NCTC10951_00231 (ligA)
Enzymes [BR:
avc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10951_00231 (ligA)
DNA replication proteins [BR:
avc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10951_00231 (ligA)
DNA repair and recombination proteins [BR:
avc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10951_00231 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10951_00231 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10951_00231 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10951_00231 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
VEI14378
UniProt:
A0A3S4VHS0
LinkDB
All DBs
Position
1:228792..231245
Genome browser
AA seq
817 aa
AA seq
DB search
MTDTDAPRGSAPAPSAPSAPSGGQGSADLSTVPAGVRERWGELVRDIEAARDAYYNAIDA
ESPLSDADYDLLYRELESLEAAHPLLARAGSPTRSVGGRAVTDFAPAPHHERMYSLQDVF
SLDEVQEWAERMSAETGVADDELAMTAEVKVDGLAVALTYEDGILTRAATRGDGTTGEDV
TGNVRTIASVPLVLAGDAHPSLLEVRGEVYFPTQEFEAFNEDRRTRNVQRQADGAPLLQV
FANPRNAAAGSLRQKNPAVTASRPLAMIAHGVGAITPAPGEELPTRQHEWYELLAGWGLP
VSPYNTVVRGRAEREAYIERYATHRHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATA
YKYPPEEVRTRLLDIAVQVGRTGRVTPFGMMEPVLVAGSTVSRATLHNATEVARKGVCIG
DMVIVRKAGDVIPEILGPVTDLRDGTERDFVMPTHCPSCGTELAPAKDGDVDLRCPNTRS
CPAQLTERIAHIGSRGALDVEGLGDEAAGALTRPDAGRREALTALAAGQSLETERGRLSL
PADELDALHASQRVEAVEKMLEEAGIAEQTPVLSGEATLFDLIEEDLCEVFVWRPVSRRG
VPTGDWRLSRFFWTKQTYDADGRVKKATVPGKNATAMLAQLRDARTRPLWRILVALSVRH
VGPTAARALAMRFRSLEALCQADVAELAEVDGVGPAIAESWARWREVEWHREILSRWEAA
GVRTREESSGQQESRRTLEGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSRKTSFVV
VGDKAGSKEAKARELGLPILDEDGFVTLLEEGPQAVS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaccgacgctccccgcggttccgctcctgccccctccgcaccctcggcaccc
tccggtgggcagggctcggcggatctgagtaccgtccccgccggcgtccgggaacgctgg
ggcgagctggtccgtgacatcgaggccgcccgcgacgcctactacaacgcgatcgacgcc
gagagccccctgtccgacgccgactacgacctcctctaccgggagctggagagcctggag
gcggcccacccccttctggcccgcgccgggtcaccgacccgtagcgtgggcgggcgcgcc
gtcaccgacttcgcccctgccccccaccacgagcgcatgtactccctgcaggacgtcttc
tccctcgacgaggtccaggagtgggccgagcgcatgagtgccgagaccggggtcgccgat
gacgagctcgccatgaccgccgaggtcaaggtcgatggcctggccgtggccctgacctac
gaggacgggatcctcacccgggccgcgacccgcggcgacggcaccaccggcgaggacgtc
accggcaacgtgcgcaccatcgccagcgtccccctggtcctggccggcgacgcccacccc
tccctgctcgaggtgcgcggtgaggtctacttccccacccaggagttcgaggccttcaac
gaggaccgccgcacccgcaacgtgcagcgccaggccgacggcgccccgctcctgcaggtc
ttcgccaacccccgcaacgcggccgccggctccttgcgccagaagaaccccgccgtcacc
gcctcccggcccctggcgatgatcgcccacggggtcggcgcgatcaccccggcaccgggg
gaggagctccccacccggcagcacgagtggtacgagctcctggccggttggggcctgccg
gtctccccctacaacaccgtggtacggggacgggccgagcgcgaggcctacatcgagcgc
tacgccactcaccgccacgacctcatccacgagatcgacggcatcgtcttcaagctcgac
gaccactccctgcagcgccggctcggccacacctcccgggtgcctcgctgggccacggcc
tacaagtacccgcccgaggaggtccgcacccggctgctggacatcgccgtccaggtgggg
cgcaccggacgcgtcacccccttcggcatgatggagccggtcctcgtcgccggctcgacg
gtgtcgcgagccaccttgcacaacgctaccgaggtggcgcgcaagggggtgtgcatcggg
gacatggtcatcgtgcgcaaggccggtgacgtcatccccgagatcctgggaccggtcacc
gacctgcgcgacggcaccgagcgagacttcgtcatgccgacgcactgcccctcctgcggc
acggagctggcgccggccaaggacggcgacgtcgacctgcgctgccccaacacccgctcc
tgccccgcccagctcaccgagcggatcgcccacatcggctctcggggcgcgctggacgtc
gagggcctgggcgacgaggccgccggcgccctcacccggcccgacgccggacgccgcgag
gccctgaccgcgctcgcggcgggccagagcctggagacggagcgcggacggctcagcctg
ccggccgatgagctcgacgccctgcacgcctcccagcgggtggaggccgtcgagaagatg
ctggaagaggccgggatcgccgagcagacgccggtgctcagtggtgaggccaccctgttc
gacctgatcgaggaggacctgtgcgaggtcttcgtgtggcgccccgtctcccgccgcggg
gtccctaccggcgactggcgcctgagtcgcttcttctggaccaagcagacctatgacgct
gacggccgggtcaagaaggcaacggtgcccggcaagaacgcgaccgccatgctcgcccag
ctccgggacgcccgcacccggcccctgtggcgcatcctggtggccctgtccgtgcggcac
gtcggcccgaccgcggcccgggccctggccatgcgcttcaggtccctggaggccctgtgc
caggctgatgtcgccgagctggccgaggtcgacggcgtggggcccgccatcgccgagtcc
tgggcgcggtggcgcgaggtcgagtggcaccgcgagatcctcagccgctgggaggccgca
ggggtgcgcacccgcgaggagagctcgggccagcaggagtcgaggcggaccctggagggg
ctgaccgtcgtcgtcaccggctccctggagggattcacccgggacagcgccaaggaggcc
atcgtctcgcgaggaggtaaggcctcgggcagtgtctcgaggaagacgagcttcgtcgtc
gtcggggacaaggcggggtccaaggaggccaaggcccgtgagctgggactgccgatcctc
gacgaggacggcttcgtgacgctccttgaagaaggaccgcaggcggtgtcctga
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