Agrobacterium vitis VAR03-1: RvVAR031_01520
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Entry
RvVAR031_01520 CDS
T08810
Symbol
sucA
Name
(GenBank) 2-oxoglutarate dehydrogenase subunit E1
KO
K00164
2-oxoglutarate dehydrogenase E1 component [EC:
1.2.4.2
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00020
Citrate cycle (TCA cycle)
avf00785
Lipoic acid metabolism
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
avf01210
2-Oxocarboxylic acid metabolism
Module
avf_M00009
Citrate cycle (TCA cycle, Krebs cycle)
avf_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RvVAR031_01520 (sucA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RvVAR031_01520 (sucA)
Enzymes [BR:
avf01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
RvVAR031_01520 (sucA)
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Gene cluster
GFIT
Motif
Pfam:
E1_dh
OxoGdeHyase_C
Transket_pyr
2-oxogl_dehyd_N
Motif
Other DBs
NCBI-ProteinID:
BCH52542
LinkDB
All DBs
Position
1:complement(174108..177104)
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AA seq
998 aa
AA seq
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MARQEANEQFQITSFLDGSNAIYIEQLYARYEDDPNSVSPEWQSFFKALGDNPSDVKKAA
KGASWQRSNWPLTPRTDLVSALDGNWGLVEKAIETKVKGKAEAAAATTGKPVSETDVLQA
TRDSVRAIMMIRAYRMRGHLHAKLDPLGIATAVEDYNELSPSSYGFTDADFDRKIFIDNV
LGLEYATVREMIEILERTYCSTLGFEFMHISNPEEKAWIQERIEGPDKGVDFTVEGKKAI
LQKLVEAEGFEQFIDVKYKGTKRFGLDGGESLIPALEQIIKRGGQEGLEEVVLGMAHRGR
LNVLTNVMHKPHRAVFHEFKGGSFKPDEVEGSGDVKYHLGASSDREFDGNKVHLSLTANP
SHLEIVNPVVMGKARAKQDQLAKVWEGDVIPLKERAKVLPLLLHGDAAFAGQGVVAEILG
LSGLRGHRVAGTMHVIINNQIGFTTNPGFSRSSPYPSDVAKMIEAPIFHVNGDDPEAVVY
AAKVATEFRMKFHKPVVVDMFCYRRFGHNEGDEPSFTQPKMYKEIRAHKTVVQVYGDRLI
AEGVITEGDLEKMKADWRANLEQEFEAGQSYKPNKADWLDGVWSGLRAADNADEQRRGKT
AMPMKSLKEIGRKLSTIPDGFKAHRTIQRFMENRAQMIETGEGIDWAMAEALAFGSLVVE
GHKIRLSGQDCERGTFSQRHSVLYDQESEDRYIPLANLAPNQARYEVINSMLSEEAVLGF
EYGYSLARPNALTLWEAQFGDFANGAQVVFDQFISSGERKWLRMSGLVCLLPHGYEGQGP
EHSSARLERWLQMCAEDNMQVANVTTPSNYYHILRRQVKRDFRKPLILMTPKSLLRHKRA
QSTLAEMAGESSFHRLLWDDAEIIKDGPIKLQKDAKIRRVVMCSGKVYYDLLEEREKRGI
DDVYLLRIEQLYPFPAKALINELSRFRNAEMVWCQEEPKNMGAWSFIDPYLEWVLAHIDA
KYQRVRYTGRPAAASPATGLMSKHLAQLQAFLEDALGG
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggcaagaagccaacgagcagtttcagatcacctcgttcctggacggatcgaat
gcgatctatatcgagcagctttatgcgcgttacgaagacgatccgaattcggtatcgcct
gagtggcaatccttcttcaaggcgctgggcgataatccaagcgacgtgaaaaaggcggcc
aagggagcctcctggcagcggagcaattggccgctgaccccccgcaccgatctggtttcg
gcgctggacggcaattggggtctggtcgagaaggccattgaaacgaaggtgaagggcaag
gcagaagccgcagccgcaaccacagggaaaccggtttctgaaaccgacgtgttgcaggcg
acccgtgatagcgtgcgcgccatcatgatgatccgcgcctatcgcatgcgcggtcatttg
catgccaagctcgacccgctcggcattgccacggcggttgaagattacaacgagctgtcg
ccatcatcctacggctttactgatgctgattttgaccgcaagatcttcatcgataacgtt
ctagggctggaatatgccaccgtgcgtgagatgatcgaaattcttgagcgcacctattgc
tcgacgctcggtttcgaattcatgcacatctccaatccggaagaaaaggcatggattcag
gagcgcattgaaggccccgataaaggcgttgattttaccgttgagggcaagaaggctatt
ctgcaaaagctggttgaggctgaaggcttcgagcagttcatcgatgtgaagtacaagggc
accaagcgctttggtctggatggcggcgaatcgctgatcccggcgctggagcagatcatc
aagcgcggcggtcaggaaggtctcgaagaggtcgtgctcggcatggcgcatcgcggccgt
ctgaacgttttgaccaatgtgatgcacaagccgcatcgcgccgtgttccacgagttcaag
ggcggttcgttcaagcctgatgaagtggaaggctccggcgacgtgaagtaccatctgggt
gcttcttccgaccgcgaattcgatggcaacaaggttcacttgtcgctgacggccaaccca
tcgcatctggaaatcgtcaatccggtggtgatgggcaaggctcgcgccaagcaggaccaa
ctggccaaagtctgggaaggcgacgtgattccgctgaaggagcgcgccaaggttctgccg
ctgttgctgcatggtgacgcggcctttgcgggtcagggcgttgtggctgaaattctcggc
ctgtccggtctgcgcggtcatcgcgtggcgggtaccatgcatgtgatcatcaacaaccag
atcggctttaccaccaatccgggcttctcacgctcctcgccttatccatcggatgtggcc
aagatgatcgaagcgccgatcttccatgtgaatggtgacgatccggaagctgtggtctat
gccgccaaggtcgccaccgaattccgcatgaagttccacaagccagtggttgtggatatg
ttctgctatcgtcgctttggccataatgaaggtgatgagccttcgttcacccagccaaag
atgtacaaggaaatccgcgcccataagacggttgttcaggtctatggcgatcgtctgatt
gctgaaggcgtgattaccgaaggcgatcttgaaaagatgaaggccgattggcgcgccaat
ctcgagcaggagttcgaggctggccagtcctacaagcccaacaaggctgactggctggat
ggcgtctggtccggtcttcgcgccgccgacaatgccgatgagcagcgtcgcggcaaaaca
gccatgccgatgaagtccctgaaggagatcggccgcaagctgtcgaccatccctgatggc
ttcaaagcacatcgcaccatccagcgcttcatggaaaaccgcgctcagatgatcgagacc
ggcgagggtatcgattgggcgatggccgaggcactcgctttcggttcgctggtcgttgaa
ggccacaagatccgcctgtccggccaggattgcgagcgcggcacattcagccagcgtcat
tcggtgctctacgatcaggaaagcgaagatcgctacattccgttggccaacctggcgcct
aaccaggcccgctacgaagtcatcaattcgatgctgtcggaagaggccgtgcttggcttt
gaatacggctattcgctggcccgcccgaatgccctgaccctgtgggaagcccagttcggt
gacttcgccaatggcgcccaggtggtgttcgaccagttcatctcgtcgggtgaacgcaaa
tggcttcgcatgtccggcctcgtctgccttctgccgcatggctacgaaggtcagggaccg
gaacactcatcggctcgtctggagcgttggctgcaaatgtgcgccgaagacaatatgcag
gtggccaacgtcacgacgccgagcaattattaccacattctgcgccgtcaggtgaaacgc
gacttccgcaagccgctgatcctgatgacgccgaagtcgctgctgcgccataagcgcgcc
cagtcgacgctggcggaaatggcaggcgaaagctcgttccaccgcttgctgtgggatgat
gccgagatcatcaaggacggtccgatcaagctccagaaggatgccaagatccgccgcgtc
gtgatgtgcagcggcaaggtttactatgacctgctggaagagcgcgaaaagcgtggcatc
gacgatgtctacctgctgcgtatcgaacagctctatccattcccggccaaggcgctgatc
aatgagctcagccgcttccgcaatgcggaaatggtctggtgccaggaagagccgaagaac
atgggggcctggtccttcatcgatccttacctggaatgggtgctggcgcatatcgacgcc
aagtatcagcgcgtgcgctataccggccgtccggctgccgcctctccggcgacaggcctg
atgtccaagcatctcgctcagctgcaagccttcctggaggacgcactcggcggctga
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