Anaerococcus vaginalis: I6H45_05050
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Entry
I6H45_05050 CDS
T07162
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avg
Anaerococcus vaginalis
Pathway
avg03030
DNA replication
avg03410
Base excision repair
avg03420
Nucleotide excision repair
avg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6H45_05050 (ligA)
03410 Base excision repair
I6H45_05050 (ligA)
03420 Nucleotide excision repair
I6H45_05050 (ligA)
03430 Mismatch repair
I6H45_05050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avg03032
]
I6H45_05050 (ligA)
03400 DNA repair and recombination proteins [BR:
avg03400
]
I6H45_05050 (ligA)
Enzymes [BR:
avg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6H45_05050 (ligA)
DNA replication proteins [BR:
avg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6H45_05050 (ligA)
DNA repair and recombination proteins [BR:
avg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6H45_05050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6H45_05050 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6H45_05050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6H45_05050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
5_3_exonuc
DNA_pol_lambd_f
Fe-S_assembly
Zn_ribbon_PF0610
DUF7501
DUF6487
RNA_pol_A_CTD
DUF2280
Motif
Other DBs
NCBI-ProteinID:
QQB61192
UniProt:
A0A7T4K4P6
LinkDB
All DBs
Position
complement(1036883..1038889)
Genome browser
AA seq
668 aa
AA seq
DB search
MDNIDKIKIDELIDKINELNYHYYTLDNPTVSDGEYDKLYDELLNLEKKTGYVNEFSPTQ
RVGGAILDKFEKHFHITRLYSQDKSQNYTQLKDWIIRTKKLRDQYNKTHEDKLEELEFIT
EYKFDGLTINLTYEDGLLKTAATRGDGISGEDVTKQVLTIPTIPTKIKEKSLLEIQGEAV
MPLSSLKKYNEENEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQISTNNLDFKTEEE
KLEFLKEQKLPVYPYKKVIKKFDDIVKEIDFIKEERHHIDVLTDGVVIKVNDVKTQEVLG
YTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPLAILEPVDFSGVTVQRATLNNY
DDILRKKVKIGSKVFIRRSNDVIPEILGVVDENQENTKEIEKPDKCPYCHSELIEGNVHI
YCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTIELFINKLGIKEIYDLYDLSYDDLIN
LESFKEKKTNNLLNAIENSKSCELNHFIHAIGIPNVGIKTARDLAEKYKSFDKLRETKQD
DLIEIEDIGEKTAEDIVDFFNDSNIKKSLDILLSKGIKIKAIDTSEKSNSLDGMKIVITG
TIENYKRNDIKNLIIENNGDVTSSVSKNTDLVLCGEKPGSKKEKAEKLGVKILENQELFE
FLKKLEEE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataatatagataaaattaaaatagatgagttaattgataaaataaatgaattaaat
tatcattactataccttagataatcccacagtttcagatggagaatatgacaagttgtat
gatgagcttttaaatctagaaaaaaagacaggctatgtaaatgaattttctccaacccaa
agagttggtggagcaattttagataagtttgaaaagcattttcatattacaagactatat
tcccaagataaatcgcaaaattatactcaattaaaagattggattataagaactaaaaaa
ttaagagaccaatataataaaacacatgaagataaattagaagaattagaatttattaca
gaatataaattcgacggtttaactattaatttaacttatgaagatggtttattaaaaact
gcagctacaagaggtgatggaatttctggggaagatgtaactaaacaagttttaactatt
ccaaccataccaacaaaaataaaagaaaaatcattattagaaattcaaggggaagctgta
atgcccttgtctagtcttaaaaaatacaatgaagaaaatgaaataccattaaaaaatgca
agaaatgctgcggcaggtgcaataagaaatcttgatacaagtcaaaccaaaaaaagaaat
ttaaaggcttatttttatcaaatttcaacaaataatcttgattttaaaactgaagaagaa
aaattagaatttttaaaagaacaaaaacttccagtttatccttataaaaaagtaataaaa
aaatttgacgatattgtaaaagaaattgattttataaaagaagaaagacatcatattgat
gttttgacagatggtgttgtaattaaggttaatgatgtaaaaactcaagaagttttagga
tatactaataaatttccaagatggtctatcgcttataaatatgatccagaggaatacaca
acaactttattagatgttgtgtggaatgtaggccgatcaggaaaagttacaccgttagca
atccttgaaccagttgacttttctggagtgactgttcaaagagctacccttaataattac
gatgatattttaagaaaaaaagtaaaaattggttcaaaagtttttattagaagatcaaat
gatgtaattcctgaaattttgggagttgttgatgaaaatcaagaaaacacaaaagaaata
gaaaaacctgataaatgtccttattgtcacagtgaattaattgagggcaatgttcatatc
tattgtccaaattcaatttcatgtactcctcaattaaaagctagaatggtacattttgca
tcaagagatgcaatggatatagaagggttgtctgaaaaaaccattgaattgtttatcaat
aaattaggtattaaggagatttacgatctttacgacctttcttatgatgatttgattaat
ttggaatcttttaaagaaaaaaagaccaataatttattaaatgccattgaaaatagcaaa
tcttgtgaattaaatcattttatccatgcaattggaattccaaatgtaggtataaaaact
gcaagagatttggcagaaaaatataaaagttttgataaacttagagaaactaagcaagat
gatttgatagagattgaagatattggagaaaaaacagcagaggacatagttgattttttc
aacgactctaatatcaaaaaatcattagatattttattatctaaggggattaaaattaaa
gcaattgacactagcgaaaaatctaattcactagatggaatgaaaattgttataactggt
acaatagaaaattacaaaagaaatgatattaaaaatttaattatagaaaacaatggagat
gttacttcttcagtatcaaaaaatacagatttggttttgtgtggagaaaaaccaggaagt
aaaaaagaaaaagcagaaaaattgggtgtaaaaattttagaaaatcaagaattatttgaa
tttttaaaaaaattagaggaggaataa
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