Allorhizobium ampelinum: Avi_2876
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Entry
Avi_2876 CDS
T00851
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03030
DNA replication
avi03410
Base excision repair
avi03420
Nucleotide excision repair
avi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Avi_2876
03410 Base excision repair
Avi_2876
03420 Nucleotide excision repair
Avi_2876
03430 Mismatch repair
Avi_2876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avi03032
]
Avi_2876
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_2876
Enzymes [BR:
avi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Avi_2876
DNA replication proteins [BR:
avi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Avi_2876
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Avi_2876
NER (nucleotide excision repair)
GGR (global genome repair) factors
Avi_2876
MMR (mismatch excision repair)
DNA ligase
Avi_2876
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Avi_2876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACM37071
UniProt:
B9JY41
LinkDB
All DBs
Position
1:complement(2393822..2395981)
Genome browser
AA seq
719 aa
AA seq
DB search
MADALIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEAR
FPTLVRSDSPSQRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDN
SIAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDV
VEVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRP
ETSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFD
IEGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDA
IDARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSI
DGIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERF
TRDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALIGW
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcattgatcccggtcgaagacctcagcgaagagcaggccgggcaggaactc
atccggttggccgccgccattgcccatcatgatgcgctttaccatggcaaggaccagccg
gaaatttccgatgctgattatgatgcgttgaagcggcgcaacgatgccatcgaggcgcgg
tttccgactttggtgcgcagcgatagtccgtcgcagcgggtgggtgcggcacctgccggg
attttctcgcagatcacccatgcaaggccgatgctgtcgctggacaacacgttttccgat
gaggacgtggcggatttcgtggcctcggtctatcgctttttaggcgtgatgccggacaat
tccatcgcctttaccgccgaaccgaagatcgatggcctgtcgatgtcgatccgctatgag
caccgcaaactcaagacggcagcgacgcgcggtgatggcacgacgggcgaaaacgtcacg
gccaatatcctgaccatcaaggaaatcccgaccgagcttcccgctgatgcccccgacgtg
gtggaggtgcgtggcgaggtctatatggcgaaaagcgattttctggcgctaaacgcccag
atggaggccgagggccgccaaacatatgtcaacccgcgcaatacggctgccgggtcgctg
cgccagctcgatgcaaaagtcaccgccagccgcaagctgaaattcttcgcttacgcttgg
ggcgagatgagcaccatgcctgccgagacgcaatccggcatggtcgaggcctttaagcgc
tggggcttcccggtcaatccgttgacccggcgtctgacgtcggttgaggagatcatcgcc
cattaccgtgagatcggccttcagagagccgatctggattacgacatcgatggggtggtc
tataaggttgatcggctggatttgcaggcccggctcggctttcggtcccgctcgccacgc
tgggcgacagcccataaatttccagcggaacaggcctttaccacagtggaggccatcgac
atccaggtgggccgcaccggcgcgctgacgccggtggcgcggctggagccgattaccgtc
ggtggcgtggttgtgaccaatgcgaccctgcacaatgccgattatatcgagggtatcggc
aacggcggcgagcgtattcgcccggaaggccatgacattcgcatcggcgataccgtgatc
gtccagcgagccggtgacgtcattccgcaggtgctggatgtggttctggaaaagcggcct
gagacctcagtgaaatacgaatttccgaaaacctgcccggtttgcggtagccatgcggtg
cgcgagaaaaacgagaagaccggcaagctggattctgtgacccgctgcacgggcggtttc
gtctgctcggcgcaggccaaggagcacatcaagcacttcgtctcccgcaatgccttcgac
attgaagggctgggtaccaagcaggtggatttcttcttcgagagtgaagacccagcgttg
atgatccgcactgcgccggatattttcaccctcaaacagcggcaggaagcttcgtcactg
acccgccttgaaaatattgacggttttggccgggtcagcgtccgcaaactgttcgatgcc
atcgatgcgcgccgcgagattgccctcaaccgctttatcttcgcgcttggcatccgtcat
gtcggcgaaaccaccgccaagctgctggcccgctcctatggctcctacgcggcgtttgct
gacgccatgcaagaggccgccccaaaatttggtgaggcctggaacgagttgaacagcatt
gatggcatcggcgaagtggtcgcggcctccatggttgaattcttcaaggaacctcgcaat
cttgaagttgtctcccgcttgttgaaggaagtgactccactggatgcagaagccgttacg
gcaagcgatagcccggtggccgggaaaaccgtggtgttcaccggctcactggagcgcttt
acccgtgatgaggcgaaggccagggccgaaagcctcggtgccaaggtggccggatcggtc
tcgaaaaagaccgattacctggtcgccggaccgggcgctggttccaagctggacaaggcc
cgtgaggtgggcgtgactgtcatgaccgaggacgagtggctggcgctgatcggctggtga
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