Apaloderma vittatum (bar-tailed trogon): 104269277
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Entry
104269277 CDS
T08559
Symbol
DHX9
Name
(RefSeq) ATP-dependent RNA helicase A
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
avit03041
]
104269277 (DHX9)
03012 Translation factors [BR:
avit03012
]
104269277 (DHX9)
Enzymes [BR:
avit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104269277 (DHX9)
5.6.2.6 RNA 3'-5' helicase
104269277 (DHX9)
Spliceosome [BR:
avit03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104269277 (DHX9)
Translation factors [BR:
avit03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104269277 (DHX9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
ResIII
nSTAND3
AAA_19
Dicer_dimer
HMUD2
AAA_14
ATPase
Motif
Other DBs
NCBI-GeneID:
104269277
NCBI-ProteinID:
XP_009876770
LinkDB
All DBs
Position
Unknown
AA seq
1273 aa
AA seq
DB search
GSKGAVCQLPEELGSPVELRCGTTLLWGWLLVCSDGARFLAADSRIGLTTTFSSGNFRSQ
LRVEGFNYVGMGNSTNKKDAQSNAARDFVNYLVRVNEIKKDEVPAFGASCSLSFPKPAAG
DTPDGGEAATDGAGSSSTLGGPLPPHLILEAEIGNGPDAAPRNCGSRGAQWDRGANLKDY
YSKREEQEAQATSESEVDLNADLHGGWTLENAKARLNQFFQKEKIQEEYKYTEMGPDHNR
SFIAEMNIYVKQLGRRIFSREHGSNKKLAAQSCALSLIRQLYHLGVIEPYSGQTKKKGES
VEPYEVSLSSDLENQLQKTVRELSLEIVPLPEDPSNPVLINVGKLAHFEPSRKQSHTEVV
PWSPPHSNWNPWTGCNIDEGPLANLAPEQISMDLKNDFMYRLEQDQELQRIQQERETLPV
KDFESEILDVIRHNSVVVIRGATGCGKTTQVPQYILDEYIRTNRAAECNIVVTQPRRISA
VSVAERVSYERGEQPGESCGYSVRFESVLPRPHASVMFCTVGVLLRKVEAGIRGISHVIV
DEIHERDINTDFLLVVLRDVIQAYPDIRVILMSATIDTSMFCEYFFNCPIVEVFGRTYPV
QEYFLEDCIQMTQFIPPPKEKKKKEKDEESAEDDDANCNFICSDEYGPEIKHSMAQLNEK
ETSFELIEALLIYIKTLNVPGAVLIFLPGWNLIYTMQKHLEMNPRFGGCQYRILPLHSQI
PLEEQRRVFDPVPPGVTKVILSTSIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYAT
VWASKTNLEQRKGRAGRVRAGFCFHLCSRARFERLQTHMTPEMFRTPLHEIALSIKLLRL
GGIGQFLAKAIEPPPLDAVIEAERTLRELDALDSNDELTPLGRILAKLPIEPRLGKMMIM
GCIFYVGDAICTISAATCFPEPFISEGKRLGYVHRNFAGNRFSDHVALLSVFQAWDDARM
GGEEAEKRFCEHKRLSMATLRMTWEAKVQLKEILINSGFPEECLMTQPFNNTGPDNNLDV
VISLLAFGVYPNVCYHKEKRKILTTEGHNALIHKSSVNCPFSSQDIKYPSPFFVFGEKIR
TRAISAKAMTLVSPLQLLLFASKKVLSDGELILVDDWIKLKMPHSAAACITALRAAMEAL
VVAVTKDPEIIRQLDPAQERMLNVIRQISRPSAAGISLLAANTRFGDGPRPPKMPRYDNG
GGHRGWGGCPRGSGYRGRGYGGYSSSGRPLGGRGHQGSAGGGYGGGGGYRGGGYRGGGGG
YRGGYRGQGWGGW
NT seq
3824 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcaagggggctgtgtgccagctgcctgaggagcttgggtctcctgttgaactga
gatgcggtacaacgctcctgtggggctggctgctggtgtgctctgacggggctcggttcc
tggccgcagattcaaggataggtctcactacaacattctcctctggtaattttcggagtc
agcttcgagtggaaggctttaactacgttggcatgggcaattccactaacaagaaggatg
cacagagcaacgctgctcgagactttgtcaattacttggttcgagtgaatgaaatcaaga
aagacgaagttcctgcttttggagcaagctgctctctctccttcccaaagccagcagctg
gtgatacccctgatggaggggaagcagctacagatggtgctggctccagttctactttgg
gtggacctcttcctccacatctgattctagaggctgaaataggcaatggcccagatgcag
cacccagaaactgtggcagtcgtggagctcagtgggatcggggtgcaaatttgaaagatt
actattcaaaaagagaggagcaagaagcgcaggcaacctcagagtcagaagtggacttaa
acgccgatctccatgggggctggaccctggaaaatgctaaggcacgtctgaaccagtttt
tccaaaaggagaagattcaggaagaatataaatacactgaaatggggcctgatcacaaca
ggagctttattgcagaaatgaacatttatgtgaagcagctgggcagaaggattttcagtc
gtgagcatggatcaaacaaaaagctggcagcccagtcctgtgccctttccttgattagac
agctctaccatcttggtgtcatagaaccgtattctggacagacaaagaaaaagggagaat
cggtggaaccctacgaggtgtcgctgtcttctgacttagaaaatcagctgcaaaagactg
tgcgggaactgtccctggagattgtgcctttgcctgaagatcccagtaatccagttctga
ttaatgttggaaagttggcccattttgaaccatcacggaaacaaagtcatacggaagttg
tgccatggtcaccacctcattctaactggaacccttggaccggctgcaatattgatgagg
gtcctctggcaaacctcgctccagagcaaatcagcatggatttgaaaaacgatttcatgt
accgtttggagcaggatcaagagctacaaaggatccagcaagagagagagaccttacctg
tgaaggattttgaaagtgaaattctggatgtgatccgtcacaattctgttgttgtcattc
gtggtgccactggttgtggcaaaaccacacaagtaccgcagtacatcctggatgaataca
tcagaaccaacagagctgcagagtgcaacatagtagtcacacagcctcggaggattagtg
cggtttccgtagcagaacgtgtgtcgtatgagagaggggaacagcccggggaaagctgtg
gctacagcgtgcggtttgaatcggtgcttcctcggccgcatgccagcgtgatgttctgca
ctgtaggggttcttctgagaaaggtggaggctggaatccgtggcattagtcatgttatcg
ttgatgagatccacgagagagacattaatactgactttctcttggtggtgctgagagatg
tcattcaggcatatcctgacatcagggttatcctcatgtctgccaccatcgataccagta
tgttttgtgaatacttcttcaactgtcctatcgtggaggtctttggtagaacctaccctg
tccaagagtatttcctggaagattgtattcaaatgactcagttcattcctccaccaaagg
aaaagaagaagaaagagaaggatgaagaaagtgctgaagatgatgatgccaattgcaact
ttatttgcagcgatgaatatggcccagaaataaagcactccatggctcagctgaatgaga
aagaaacttcttttgaactcattgaggccctgctgatttatatcaagactctgaatgtcc
caggagctgtgcttattttcttgcctggctggaatttgatatatacaatgcagaagcatc
tagaaatgaacccccgctttggaggctgccagtatagaattttacctctgcattcacaaa
ttcctttggaggagcagcgtcgagtgtttgatcctgtgcctcctggagtaacgaaagtta
ttttatctaccagcattgctgagacgagcattaccatcaatgacgtggtctacgttatag
actcctgcaaacaaaaagtgaagctgttcactgctcataataacatgacaaactatgcca
cagtttgggcatcaaaaacgaatttggagcagcggaaaggaagagccggacgtgtgcgtg
ctggattttgtttccatttgtgcagcagagctcgctttgaaagacttcaaactcatatga
cgcccgaaatgtttcgaacgccacttcatgaaattgctttgagcatcaaattgctgcggc
tcggaggaattggtcaatttttggccaaagcaatagaaccaccgcctttagatgcagtga
ttgaagcagaacgcacgctccgagagcttgatgccctggattccaatgatgagttgacgc
ctcttggaagaatcctggccaaacttcccatcgagcctcgtctaggcaagatgatgataa
tgggctgtattttttatgtaggagatgctatttgtaccatctctgcagccacctgtttcc
ccgaacctttcatcagtgaaggcaaacgcctgggttacgtccataggaatttcgctggga
acaggttttcggatcacgttgctttgctctccgtcttccaagcctgggacgatgcaagaa
tgggtggtgaagaagcagaaaaaagattctgtgaacacaaacgactcagcatggctactc
ttcgaatgacttgggaagcaaaagtccagctgaaagaaatacttattaattctggcttcc
ctgaagaatgcttgatgactcaaccctttaacaacacgggaccggataataatctcgacg
ttgtcatctccctgcttgcttttggggtctaccccaacgtctgctaccacaaggagaaga
ggaagattcttaccactgaggggcacaatgcactcatccacaagtcatctgtcaattgcc
ctttcagcagccaggacatcaagtatccgtcgcctttttttgtttttggagaaaagattc
gaacgcgagccatctctgccaaggcaatgacattggtgagcccgctgcagctgcttctct
ttgcctccaagaaagtcctgtcagatggagagctcattctggtagacgactggatcaagc
tgaagatgccccacagtgcagctgcctgtatcactgctctgcgtgcggcgatggaggctc
ttgtggtggcagtgactaaagaccccgagatcattcggcagctggacccagcccaggagc
ggatgctgaatgtgatccgtcagatctccaggccctctgctgcaggcatcagcctcttgg
ctgccaacacaaggttcggtgatggtcctcgcccccccaaaatgcctcgctacgacaatg
gaggtggccacagaggctggggaggttgcccgcgtggctctggctacagaggtagagggt
acggtggctacagctcctccggcaggcccttgggaggaagaggacaccaaggtagcgcgg
ggggaggctacggtggtggaggaggctatcgaggaggaggctatcgaggaggaggcggtg
gctacagaggaggctaccggggccaggggtggggcgggtggtag
DBGET
integrated database retrieval system
