Apaloderma vittatum (bar-tailed trogon): 104277406
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Entry
104277406 CDS
T08559
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit04622
RIG-I-like receptor signaling pathway
avit04623
Cytosolic DNA-sensing pathway
avit05164
Influenza A
avit05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104277406 (DDX58)
04623 Cytosolic DNA-sensing pathway
104277406 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104277406 (DDX58)
05168 Herpes simplex virus 1 infection
104277406 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
avit04054
]
104277406 (DDX58)
Enzymes [BR:
avit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104277406 (DDX58)
Pattern recognition receptors [BR:
avit04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
104277406 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
CARD_2
Helicase_C
AAA_19
AAA_25
AAA_22
Motif
Other DBs
NCBI-GeneID:
104277406
NCBI-ProteinID:
XP_009872330
LinkDB
All DBs
Position
Unknown
AA seq
816 aa
AA seq
DB search
MLEVDPVALLPYINTCLIKRDCEEILQISESRSKAAGITKLIECLCRSDKENWPKSLQLA
LDETGHYNASQLWDMREDNCKDVDGETTDASENSLENTITFSGEAECDNLSENLCSSSEE
VCQSSPVYEPKKTRSYQAELAQPALDGKNTLICAPTGSGKTFVALLICEHHFQNTPSGRK
AKVVFLATKVPVYEQQKTVFKQHFERYGYSVQGISGETAANVSVEKVIEDSDIVVLTPQI
LVNSIEKGSLSSLSIFTLMIFDECHNTTGNHPYNVLMARYLEQKFDSSANQLPQVIGLTA
SVGVGNAKSVKETMEHICTLCSYLDIQAISTVRENKQDLQRFVKKPETYVRWVKKRVHNH
FADIISGLMSETEALMRKIYSVDAISQIKKSDFGTQKYEHWIVTTQRKCRLLQLEDKEKE
SSICRDLFICTEHLRKFNDALIISEDARIEDASAYLIEFFTNVKNGPYTELEEQLTAKFQ
EKEPALTALSKDESNENPKLEELACILDEAYRYNPQTRTLLFAKTRALVAALKKWIEANP
LLSHIKPDVLMGRGKRDQQTGMTLPMQKGVLDAFRSNEDSRLLIATSVADEGIDISECNL
VVLYEYFGNVTKMIQVRGRGRAKDSKCILVTSKTEVVESEKHNRYKEEMMNEAIENLQTW
DEKTFARKIHDLQMKEKVLRDSRKKDTRHQLVEGKKNLLCGKCKAYACSTDDIRIIKESH
HTVLGDAFKERYVTKAHSRPVQFDCFVKKSKMHCRGTSCQHDWGIIVKYKTFDNLPVIKI
KSFVVEDAETGTPMDFTKWKDINFYLKNFDDEETSS
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgctagaagttgatccagtagcgctcttgccttacataaacacatgcctgataaagagg
gattgtgaagagatcctgcagatcagtgagtccaggagcaaagcagccgggataacaaaa
ctcatcgagtgtctctgtcggtcggataaggagaactggccaaaaagccttcagctggca
ctggatgaaacaggacattacaatgccagtcagctgtgggatatgagagaagataattgc
aaagatgttgatggtgaaacgacagatgcctctgagaacagcttagaaaacacaatcaca
ttttctggagaagcagaatgtgataatctcagtgaaaatctctgttcatcctcagaagag
gtgtgtcagtcttcacctgtttatgaaccaaagaagactcggagctaccaggctgaactg
gcacagcctgctcttgatgggaaaaacacactgatatgtgcccccacaggatctggaaaa
acttttgtggcacttctgatttgtgagcaccatttccaaaacacaccgtcaggacgaaag
gcgaaagttgttttccttgcaaccaaggtgccagtgtacgagcaacagaaaactgtattc
aagcaacattttgaaagatatggatattctgttcaaggaattagtggtgaaacagctgca
aatgtctctgtagaaaaggttatagaagacagcgacatcgttgtgctaacgccccagatt
cttgtgaacagcatcgagaaagggtcgcttagctccctctccattttcactctgatgata
tttgacgagtgccacaacactacgggcaaccacccttacaatgtgctaatggccagatac
ctggaacaaaaattcgactcctctgcaaaccagctgccccaggtcataggtttgactgcc
tctgttggagttggtaatgccaagagcgtcaaggaaacgatggagcacatctgtaccctc
tgctcctacctggacatacaggccatatccaccgtcagagagaacaaacaggatctgcag
agatttgtaaaaaagccagaaacatatgtcagatgggttaaaaagcgagttcacaatcac
ttcgcagacattatctcaggtctcatgtcagagacagaggcgttgatgaggaagatttac
tcagtggatgctatctcccaaatcaaaaagagtgatttcggaacacagaaatatgaacat
tggatcgttaccacccaaaggaaatgcagactgttgcaactggaagataaagagaaggaa
agcagcatttgcagagaccttttcatttgcactgaacacctgcggaaattcaacgatgct
ctcatcatcagtgaggatgcccgcattgaagatgcttcagcctacttaatcgaattcttc
acaaatgtcaaaaatggaccatatacagaattagaggagcaactgacagccaaatttcaa
gagaaagaaccagcactgactgccctttcaaaagatgaatcaaatgagaatcccaagctg
gaggagctagcttgcatcctggatgaagcgtaccgctacaacccacagactcgcactctt
ctttttgctaagacaagagccttagtagcggctttgaagaagtggatagaagcaaaccct
ctgcttagccacataaagccagatgtgttgatgggtcgtggaaaaagagatcaacaaaca
ggtatgaccctcccgatgcagaagggtgtcctggatgcattcagaagcaacgaggacagc
cgattgctaattgctacgtcagttgctgatgaaggcattgacatttctgaatgcaacctc
gttgtgctctatgaatacttcggtaacgtcaccaaaatgatccaagtcagaggtcgtgga
agggcaaaagacagcaagtgcatcctggtgacaagcaaaacagaagtggttgagagtgag
aagcacaaccgttacaaggaagaaatgatgaatgaagctattgaaaacctccagacttgg
gatgaaaaaacatttgccagaaagatacatgacctacaaatgaaggaaaaggtgttacga
gattccaggaagaaagacacacgacatcagctggtggaagggaaaaaaaaccttctgtgt
ggaaaatgcaaagcctatgcctgcagcacggatgacatcagaattataaaggaatctcat
cacactgtcctgggagacgcattcaaggagcgatatgtaacaaaggctcacagcagacca
gtccagtttgattgttttgtgaaaaaaagcaagatgcattgccgaggtaccagctgccag
catgactggggaatcatagtgaagtacaagacatttgacaacctaccagtgatcaaaatc
aaaagctttgtagtagaggatgctgaaactgggacaccaatggattttacgaaatggaaa
gatattaatttttatttgaagaattttgacgatgaagaaacatccagctga
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