KEGG   Apaloderma vittatum (bar-tailed trogon): 104278052
Entry
104278052         CDS       T08559                                 
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2B-like
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
avit  Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:avit00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    104278052
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:avit03000]
    104278052
   04121 Ubiquitin system [BR:avit04121]
    104278052
   03036 Chromosome and associated proteins [BR:avit03036]
    104278052
Enzymes [BR:avit01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     104278052
Transcription factors [BR:avit03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    104278052
Ubiquitin system [BR:avit04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     104278052
Chromosome and associated proteins [BR:avit03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    104278052
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     104278052
SSDB
Motif
Pfam: PHD_4 F-box-like F-box DUF7885 zf-CXXC LRR_4 LRR_At5g56370 LRR_At1g61320_AtMIF1 AppA_SCHIC
Other DBs
NCBI-GeneID: 104278052
NCBI-ProteinID: XP_009873205
LinkDB
Position
Unknown
AA seq 683 aa
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICN
EIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQK
MNRDNKEVTDAAKRKGDCEEDPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEKPQEP
TMRKRRRSWKAPDDRTAMIKPLRRLKQQXXXXXXPPRSKDSDQSRSSSPTAGPSTEGAEP
RDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEPKRA
LNNSERLHRFSKGLNGTPRELRHQLMPSLRSTPRGITRPPPSLSPPKCIQMERHVIRPPP
ISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWTKIDL
NHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIAVSAL
CSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKEQFCG
SCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTD
QSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQ
FIAEMSVSVQFGQVEEKLLQKLS
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgaagaaattcgggggacctggcaggatgaaacagtcctgcattatgaggcagtgcatc
gcaccggtgttgcctcatactgctgtgtgtctggtgtgcggagaagctgggaaagaggac
actgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgtaat
gaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgacgag
ctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaaaag
cgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctgaaggaacagaaa
atgaacagggacaacaaggaagtaacagacgccgcgaaacggaaaggggattgcgaagaa
gatcccaggcggaaatcggaggaacattccaaaaagactcaagttgactcgatactgagg
agaaagtcagacgaagtgcatctgtggaggaaaaggaaatttgagaaaccccaggaaccc
actatgagaaagcggcggcgatcgtggaaggctccagatgaccgaactgccatgatcaaa
cccctgcggcgcctgaagcaacagnnnnnnnnnnnnnnnncacctcccaggtccaaggat
agcgaccagtcgcgctccagctcgcccactgcaggtcccagcacggagggcgccgagccc
agggacaagaagaagttcaagatgaggaggaaaaggcgacttcccaataaagaactgagc
aaggagctcagcaaggagcttaaccaggagatccaaaaaaccgagaacagccttgccaat
gagaaccaccaacccatcaaatctgaacctgagagcgagaacgaggaacctaagcgcgct
ttgaacaacagcgagagactccataggttcagcaaagggttgaacgggactccccgggag
ctgaggcaccagctcatgcccagcctgcgcagcacaccgcggggaataacccggccgccg
ccttcgctctctcctcccaaatgcattcagatggaacggcacgttatccggccgcctccc
atcagcccccctccagactcgctccccctggatgatggtgcagcccacgtgatgcagagg
gaagtctggatggctgtctttagctacctcagtcatagagacttgtgcatctgtatgaga
gtttgcaagacctggaacagatggtgctgtgacaaaagattatggaccaaaatagattta
aaccattgtaaatccatcactccacttatgcttagcggcattattaggagacaacctgta
acccttgatcttagctggacaaatatatctaaaaagcagctgagttggcttatcaacaga
ctgccaggtcttcgagacctgctcttatcagggtgctcgtggatagcggtgtcggcactt
tgtagttccagctgtcctttactccgaactctggacgtgcagtgggcagaaggactgaaa
gacgcacaaatgagagacctcttgtcaccacccacagataaccgcccaggctgcaacggg
tgtactttagagagtatggaaacactttcttccagttcagggaaggagcagttctgtggg
tcatgccacattcgcccggatatcagctcaggtcagatcgacaaccggagtaaactacgg
aacatcgtcgagctgcgtttggccggcctggatatcacggatgcttctttgcggctgatc
ataaggcacatgcctctgctctccaaactcaatcttagttactgtaaccacgtgacagat
cagtctattaacctgctgaccgctgtcggaaccaccacacgggattcgttaacggaaatt
aatttatcagactgcaataaggttactgaccagtgcctgtcttacttcaaacgttgtgga
aacatctgccagatcgacctgaggtactgcaagcaagtgacaaaagaaggctgcgagcag
ttcatcgcagaaatgtctgtaagtgttcagtttgggcaagtggaagaaaaacttctgcaa
aaactgagttag

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