Apaloderma vittatum (bar-tailed trogon): 104278452
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Entry
104278452 CDS
T08559
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
avit03036
]
104278452 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
avit03400
]
104278452 (SMCHD1)
Chromosome and associated proteins [BR:
avit03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104278452 (SMCHD1)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104278452 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104278452
NCBI-ProteinID:
XP_009873735
LinkDB
All DBs
Position
Unknown
AA seq
1888 aa
AA seq
DB search
FALAELIDNSLSATCRNTDIRSIQIKLLFDDSQGKPAVAVIDNGRGMTSKQLNNWAVYRL
SKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDV
HELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDDERFLHNLILEERDKESFTAV
VITGVQPVHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNETNAVTKDLSPFNNIDIQISMF
EKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAQVDGEGIVEGIIRYHPFLYDKETYPD
DPCFPSKLNDDDDDDDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLA
PIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFAL
WLKDCHEKYDKQIKFTIFKGVTTRTDLPSKRMQSPWTVYAAIEWDGKTFKTGQLVKTIKT
LPIFYGSITKFFLYGDHDGDIFATGGEVQIALEPQALYAETKTIPISKLDRTVSDKAVKK
YVEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGG
SKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESN
ADTYAGRPLPSKIFKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTD
TKPILEASGLTLQYEEITAGPKCIIKGVTAKGCVNSCQGKNFNMKITLPGLKEDTQSFKI
RLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNLPV
YSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEILSCKDVPPVEKIIKLLPSSHVARLQ
VLSMDGQKAIQIKHQDEINWVAGDVMRNLIFQMYDEAEREINITSALAEKIKVNWTPKIN
KEELMQGILPDVKVPSSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPKNIKCKLKGPNT
LQLGEELQSEIDVMITDQYGNQVQTVTSACVNSLGVSGPGLDKSNLKITWQESTLTMRVK
GIRFKPCLLGSKELCFAWREFSDFLRVTLTAGFPAKLQFVDWPELEKPVAVINGRELQKP
LIVQLCDQWGNPSPEPNVKISLIKSNNLKIVPSNQQHKTDDAGRANLGVISIHAPRGEHT
LQLKASYNKTTLDCPVITLNVLPDPEKPVRLNVKYDKNASFQAGGTFPDFMVSVLSEDDN
IIKNINPARISMKMWEAQSSGTRIPIDVTTFSCSKVKDDKEDGFFYFRDKVIPERVGTYT
IQFTFAMDKTNVLSSDQIIADVVPNDPVRLLPDCLPATPAVSNVSALSSRTLVKDLYLHV
MDEYNNHTGVDLVGKIVAKIKSPNEDNIEIPQFQGKVEFPFDGGSAEINLVLAENSPGRD
STEYILVFEPDLPALKKPLEPYCLSFMFYNGFKKQQRMATLTKERDQLSQAISVYRKWFD
TTNQLVTELKCQVKEAETRETHLKSELKKHQIEVPQINTLQYVDSLIKQKIVDQEGVMKQ
PRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFD
ETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKIFFRPIGNPVFARDLLIFPDNVEHCQT
VFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDK
LRGMVFGAPIPKLYSTFSGQIELLQQYRAAMVKLDNVNKDLDLHLQSLNTPEMRKKKQEL
ADQEKSLKLVEQKLGMTPSGGFTESLFQPTVDVGDTPIPPKRMRRETVKKLYSSEEWISS
PTKHQLQQQQPLQIYSSELNGTARKRKA
NT seq
5669 nt
NT seq
+upstream
nt +downstream
nt
catttgctcttgctgagttgattgacaattctctgtctgctacatgcagaaatactgata
ttcggagcatacagataaaactgttatttgatgactcccaaggaaaaccagctgttgctg
tgatcgataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtatagat
tgtcaaagtttacaagacaaggtgacttcgagagtgatcattcaggatatgtacgccctt
tgccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaaacaag
cagtattcttcgttggacagtctgccagaatgataagcaaacctgcagattctcaggatg
ttcatgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaa
tatacagcggatatattcgaaacagaaagccgtcagactctactcacatcacaagtgatg
atgaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcag
ttgtcattacaggtgtacaaccagttcatattcagtacttgaaaaactactttcatcttt
ggacaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaatgaaa
ctaatgctgtaacaaaagacctaagccctttcaacaacattgacattcagatttcaatgt
tcgaaaaaggaaaagtaccaaagattgtcaatcttagggagatcaaagatgacatgcaga
cactgtatataaatactgcagcagatagttttgagtttaaggcacaagttgacggagaag
gtatagtggaaggcatcatccggtatcatcccttcctgtatgataaagaaacataccctg
atgatccatgttttccatcaaaattaaatgatgatgatgatgatgacgactgctttatag
tagaaaagggtgccagagggaaaaggcctatttttgaatgtttttggaatgggagattaa
taccatacacaactgtggaagattttgactggtgtgctcctccaaagaagagaggattgg
caccaattgaatgctacaacagaatttctggtgcattatttaccaatgataagttccaag
tcagcacaaacaaactcactttcatggatctggagctgaagctaaaagataagaatactc
tgttcacaagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctt
tgtggctcaaagactgtcatgaaaaatacgacaaacagataaaattcacaatctttaaag
gagtaactacacgtactgatttaccatccaaaagaatgcagagcccttggaccgtgtatg
ctgcaatagagtgggatgggaaaacattcaaaactggacagctggtgaaaactattaaga
ctcttccaatattctatggcagtatcacaaaattttttttgtatggagaccatgatgggg
atatatttgccactggaggagaagttcagattgctttggaacctcaggcattgtatgctg
aaacaaaaactattccaatctcaaaacttgacagaacagtgtctgacaaagcagttaaaa
aatacgtagaggatgaaatggcaaggcttcctgacaaattatcagtaacatggcctgaag
gagatgaattattaccaaatgaaacaagatttgctggtacaccaataggagcattaagaa
tagaaattttgaataaaaaaggagaagcaatgcaaaaacttcctggtacaagccatggag
gttcaaagaaactacttgttgaactgaaggttattttacattcacctactggcaataaag
aaataatatcccatatcagtcagcatggaggcaaatggccatactggtttaaaaaaatgg
aaaatcttcagaaacttgggaactacaccttgaaattgcaagtagtattgaatgaaagta
acgcagatacttatgcgggaaggcctctaccatctaaaatatttaaatttactattatag
agggcaaaccagagaaattttcagttggtcttttggagcttccttttcgagttggagtac
cttttaatattcctttagaattgcaggatgaatttggtcatgcaacacagttgacaactg
acactaaaccaattcttgaagcaagtggactgacattgcagtatgaagaaataactgcag
gaccaaagtgcatcattaagggtgtcactgctaaaggctgtgtaaatagttgccagggca
agaactttaatatgaagattacgcttcctggtttgaaagaagacacacaaagctttaaaa
taagattgcagcctggcccccctcatcaactgaaagtgaaaccagattctgaaattctca
aaattgaaaatggcacagctttcccctttcaggttgaagttctggatgaatcaggaaata
taacagcacagccaaagttgatagttcattgtaagtttttaggtgcttcaaaccttcctg
tgtattctgtggactgcagtaatgcaggaacaaacattttaactggtccagttatacatg
tacaaaatatcaagaaagaccagatgctgaaagcaaggattgaaatacttagttgtaaag
atgtgccgccagtggaaaagattattaaacttcttcctagcagtcatgttgcaagactac
aagtcttaagtatggatggacaaaaagctattcaaattaaacatcaggatgaaattaatt
gggttgctggtgatgtcatgcgcaaccttatatttcagatgtatgacgaagcagaaaggg
aaataaacataacttcagctctggcagaaaaaatcaaggttaactggacacctaaaatta
acaaggaagagttgatgcagggaatattacctgatgtaaaagtaccatcatcagtaaaag
atgtacgttactgtctaattacttaccttgatgaccatgtgtctttggagagtgcattca
cagtcagaccacttcctgatgaacccaaaaacattaaatgcaaattaaaaggaccaaaca
cattgcagttgggtgaagaactacaaagcgaaattgatgtaatgattacggatcagtatg
gaaatcaggttcagacagtgacatcagcctgtgtaaattccctaggagtttctggaccag
gacttgataaatcaaatttgaaaataacatggcaggaaagtactctaacaatgagagtaa
aaggtattcggtttaaaccttgtttacttggaagcaaagaactgtgctttgcttggcgtg
aattttctgacttcctcagagtaactttaactgcaggattccctgctaaactgcagtttg
tggactggccagagttagaaaagcctgttgcagtgattaatggtagagaactgcagaagc
cccttattgttcagctgtgtgatcagtggggaaatccatctcctgaacctaatgtcaaaa
tcagccttataaagagtaacaacttaaagattgttccttcaaaccagcagcataaaacag
atgacgctggtagggctaacctgggagttattagtattcacgcacctagaggagagcaca
ctttacaacttaaagcctcttacaacaagaccaccttagattgtccagtaatcacattaa
atgtcctgcctgatcctgagaaacctgtccgcttgaatgttaaatatgacaaaaatgctt
cttttcaagcaggaggtactttccctgatttcatggttagcgttctttctgaagatgaca
acattattaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagca
gtggaactagaataccaattgatgttacaacatttagctgtagtaaagtgaaggatgaca
aggaggatggcttcttttacttcagggataaagtgattccagagagagtgggcacttaca
ctatccagtttacctttgcaatggacaagacaaatgtgctcagcagtgaccagattatag
ctgatgttgtacctaatgaccctgtgcgcttgttacctgattgtttgccagctactccag
cggtttccaatgtttcagctctttctagccgtacactggtcaaggatttatacctccatg
taatggatgaatataacaaccacactggagttgatctagttggcaaaatagtagcaaaaa
ttaagagcccaaacgaagacaatatagagatcccacagtttcaggggaaagttgagtttc
catttgatggaggatcagccgaaattaatctagtgctggctgaaaacagccctggaaggg
atagcactgagtatattcttgtatttgagccagatctgccagctttgaaaaaacctttgg
aaccatactgtctgtcatttatgttttataatggtttcaagaagcaacaacggatggcaa
cacttacaaaggagagagaccaattatctcaggccataagtgtttacagaaagtggtttg
atactactaatcagcttgtaactgaacttaaatgtcaggttaaagaagctgaaacaagag
aaactcacctgaagagtgaactaaagaaacaccagattgaagtaccacagataaatacgc
ttcagtatgtggattctcttataaaacaaaagatagtggaccaagaaggagtgatgaaac
aaccaaggcgaacttgtaccctgccaaactacccaaaaggcaaccaggatattttaggca
agattgcacatttagctcaaattgaggataatgaagcagcaaaggttatctcctggcatt
tagcaagcgacatggactgtgtagtcacactgactactgaagctgctcgttctattttcg
atgaaactcaaggacgacaacaagtgttaccccttgattctatttacaagaagacactcc
ctgattggaacaggcctttacctcacttaagaaatggaaaaatcttcttcagacctattg
gaaatcctgtatttgccagagatctgttaatatttccagataatgtagagcattgtcaaa
cagtgtttgggatgctattgggtgacactatcattatagacaacttggatgctgccaacc
attacagaaaagaggttgtaaaaattacacattgcccaactttgctgactagagaaggag
acaggattcgcagcaatggaaaatttggaggccttcagaataaagctcctccaatggaca
agctaagaggaatggtatttggagcacccatcccaaaactttactctactttctctggac
agatagaacttcttcagcaataccgtgccgcaatggtcaaacttgataatgtgaataagg
accttgatttacatttgcagtcacttaacactccagaaatgcgaaagaaaaaacaggaac
ttgccgaccaagagaaaagcctcaagctggtagaacaaaaattgggtatgactccatcag
gtggattcactgaatcgttatttcagcctacggtagatgtgggtgacacacccatccctc
ccaaaagaatgcgaagagaaacagtaaaaaaattgtatagctcagaagagtggatatcct
ctcccaccaagcaccagctgcagcaacagcaaccgctgcagatatattcgtcagaactta
atggaactgcacgaaagagaaaggcataa
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integrated database retrieval system
