Apaloderma vittatum (bar-tailed trogon): 104279007
Help
Entry
104279007 CDS
T08559
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104279007 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avit03400
]
104279007 (LIG4)
Enzymes [BR:
avit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104279007 (LIG4)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104279007 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
104279007
NCBI-ProteinID:
XP_009874452
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
ASKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHRKEKDVTDSF
YPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPSGSRGDAGD
FAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKTLLKKSLLQLITQSTALEQK
WLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHNPSVSLSDVSITLFS
AFKPMLAAIADVQQIEKQMKNQLFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGA
SPLDGSLTPFIHKAFKSNIQNCILDGEMMAYNPETQSFMQKGSKFDIKRMVEDSDLQTCF
CVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVTGRIHVVHKKNASKRKEVIDALNEAIDN
REEGIMVKDPMSTYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMMSHFL
CAVAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRRKDPPCNILCGTEK
PEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMTSDMLEDLRS
KAEGKLASKHLHIEEYDEPQEKKRKTISKVRKIIGIAEQFKAPDLSSINKVSNVFEDVEF
CVMTGTGMCSKSELESRIAEWGGSVVQNPGPETYCVIVGAENVRVKNIIASNKYDVVRAE
WLLQCFQTQTLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADADVAQLKEVFSRMKDT
KVMPLDMIAELEERYAWNSCQLSIFRGNTVYVDCYAVINEPGTKINGTILSIRALELRFY
GARVVSHLEEGVSHVVIGEDHSRVKEIKALRRTFGKKFKIVSELWVTQSVEEGVLKNENE
YLI
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
gcttctaaaaaaacagtggcctctcacgtgccttttgcagatctatgttctactctggag
cgaatacagacgtgtaaatctcgtccggagaaaaccaagtatttcaaggattttctggat
tcctggagaaaattccatgatgctctccatcggaaagagaaagatgtcacggattctttt
tacccagccatgcgacttattcttccccagttggaaagagaaaggatggcatatggaatt
aaagaaactatgcttgcaaagctgtatattgaactgcttaatttaccaaaagatggaaaa
gatgctgcaaagcttttaaattacagaacacctagtggctcacgtggagatgctggagat
tttgcaatgattgcgtactttgtgttaaaacctaggagcccgaaacagggcagactgaca
atagaacaagtcaatgaacacttagatgccatagctaataataacgctgctaaaaacaag
actctgttaaagaaaagtctccttcagttaattactcagagcacagcactggaacagaaa
tggctcatccggatgattataaaggatctaaagcttggtgttagtcagcaaactattttt
tccatttttcatcctgatgctgctgaattacacaacgtcacaactgatttggaaaaagtt
tgcagacaattgcacaatccctccgtctcacttagtgatgtttctatcacattgttttct
gcctttaaaccaatgcttgctgctattgctgatgtccagcaaatcgagaaacaaatgaaa
aaccagttattctacatagaaactaagctggatggtgaacgtatgcaaatgcacaaagat
ggagatgtgtataaatatttttcccgaaatggatttgactatactcagcagttcggtgct
tctccccttgatggttcattaacaccatttattcataaagcgtttaagagcaatatacaa
aattgcattcttgacggtgaaatgatggcttacaatcctgagacacaaagttttatgcag
aagggaagcaagtttgacataaaaagaatggtggaggactccgatctgcagacctgcttc
tgtgtgttcgacgtgttgatggttaacgatcagaagttggggcacgaagtactaagcaaa
agatacgaaatcttgagcagcgtgtttaccccagtaacgggcaggatacatgttgtacat
aaaaaaaatgccagtaaaagaaaagaagtaattgatgctttaaatgaagcaatagataac
agagaggaagggattatggtgaaagatcccatgtccacctacaagcctgacaaacgtgga
gaaggctggttaaaaatcaagccagaatacgtcactgggctcatggatgaactagacctt
ttaattgttggtggttactgggggaagggctcacgtggtggaatgatgtctcattttctg
tgcgctgttgcagagacgccccctccaaatgaaaaacctaccgttttccactcgatttgt
cgtgttggctctggctatactatgaaggaattgtatgatctgggtttgaagctggctaaa
cactggaagccctaccgtaggaaggaccctccctgtaacattttgtgtggcactgaaaaa
cctgaaatgtacatcgagccttgcaactctgtcatagttcagatcaaggcggctgagatt
gttgacagcgatatgtacaaaactgactgtactctgaggttcccccgaattgagaagata
agagaggacaaagaatggtatgagtgcatgacttcagacatgttagaggacctcagaagc
aaagcagaagggaagctggcatctaagcaccttcatatagaggagtatgatgagccacag
gagaaaaaaaggaaaactatatcaaaggtgaggaagataattggtatagctgagcaattt
aaagctcctgatctttctagcataaacaaggtttcaaatgtatttgaagatgttgagttt
tgtgttatgacagggacaggaatgtgctccaagtccgaactggaaagcagaatagctgaa
tggggcggcagcgtggtgcagaacccggggccagagacttactgtgtcattgtaggagct
gagaatgtcagagtgaaaaacatcattgcttccaacaaatacgatgtggtgagggcagag
tggctccttcagtgttttcaaacccaaacgctggtgccttggcagccagcctttatgatc
cacatgtctcctgacacaaaagaacattttgctcgtgagtatgattgctacggggacagc
tacacagcagatgcagatgttgcccaactcaaggaagtgttctccagaatgaaagacact
aaggtgatgcctttggacatgattgcagagttagaagaacgttatgcatggaacagctgt
cagctcagtatattcagaggaaacactgtttatgtggactgttatgctgtcattaatgag
cctggaaccaaaatcaatggaacaatactgtcaattagagctttggagctccgtttttat
ggtgcaagagtagtctctcaccttgaagagggtgtatcccatgttgttataggagaagat
cattcccgggtaaaagagataaaagcactgaggagaacatttgggaagaagtttaaaatc
gtgtctgagctgtgggtaacacagtcagtggaggaaggagtcctaaagaatgaaaatgag
tacttaatttaa
DBGET
integrated database retrieval system
