Apaloderma vittatum (bar-tailed trogon): 104279026
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Entry
104279026 CDS
T08559
Symbol
BRCA1
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03440
Homologous recombination
avit03460
Fanconi anemia pathway
avit04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104279026 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
104279026 (BRCA1)
03460 Fanconi anemia pathway
104279026 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
avit01009
]
104279026 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
avit04121
]
104279026 (BRCA1)
03036 Chromosome and associated proteins [BR:
avit03036
]
104279026 (BRCA1)
03400 DNA repair and recombination proteins [BR:
avit03400
]
104279026 (BRCA1)
Enzymes [BR:
avit01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104279026 (BRCA1)
Protein phosphatases and associated proteins [BR:
avit01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104279026 (BRCA1)
Ubiquitin system [BR:
avit04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104279026 (BRCA1)
Multi subunit type E3
BRCC complex
104279026 (BRCA1)
Chromosome and associated proteins [BR:
avit03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104279026 (BRCA1)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104279026 (BRCA1)
BRCA1-A complex
104279026 (BRCA1)
BRCA1-B complex
104279026 (BRCA1)
BRCA1-C complex
104279026 (BRCA1)
BRCA complex
104279026 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
104279026 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
BRCT_3
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_5
zf-Nse
zf-RING_6
RTT107_BRCT_5
zf-RING_10
zf-ANAPC11
zf-MIZ
DUF2018
zf-RING_4
TRAF3_RING
Zf_2nd_IFT121
LMBR1
Motif
Other DBs
NCBI-GeneID:
104279026
NCBI-ProteinID:
XP_009874476
LinkDB
All DBs
Position
Unknown
AA seq
1754 aa
AA seq
DB search
MDFSVISDGDVQNVLSAMQKNLECPICLDVVEEPVSTKCDHIFCRFCMFKLLSKKNKGVI
QCPLCKSEVTKRSLKENSRFKQLIEGLLETIRAFELDTGIKFLNSHHFPKTSTEVTAAEF
LRKESSVIQSKGFRNRKKSAKGKGQKNCTLPEPNVDTQLTDSRVKRCSLRNKIQKCDSEK
GIYIEFGKICSDXLFKQTSYTGLDKEVLQISAQEKLEKPKSAEKGNEYSCNTQPNTLGAK
EIILPNVVGESDSLKEDLSKKSTRSITEYGKPGQVNLTECQSSPLNVLAGDLLAEQCDGI
NNSSPVRNEDTSLFKNTAEEDAEQTPCNNESKEFDLKDSLESRLNKSKEIDSVVQSVETC
ELENGSCHEKTSPEEVLFQPETLDCATLNQVSRKRLKRSIQKVNEWFSKSNEILSSSSSQ
DGSAGPGDVSGEDVCLSDKDSCISEKTDPLVDSMEIAVVEGNKRWSKQTADSIKDKIFGK
TYTRERKSNPPIILKDILPPIEKEEEDVAAKCLNNSSKDGLKRKRKTACVLQPEDFIKKK
DIEEADGCPQNADWCLGDAENKRDYVNESHLSENREDHTLAELKENGESIWKKAAEKVTS
KHCDGELELNNCDHKSTQKSSAAKRCKRSTRAMCALQLVVDRNSVSPDPAEPQIDSYPSS
EEPGKVDSEQRQVRRSRRLQLLSEEMTKETGKEVVLKGARTYDSDHEGPFFGVRRNVLVH
ASECKDLRQHQGTLSHKPLADLKGNDLEAGEIQIRLKKSPGTAEAGKSLFNPTSSCQRSD
CGSFAADASSQGGEILGSPLRLQSPSRTVVQTASHLTEETTASCTTFPCNGGRDTQNVPG
DVTTEKLLMAKNVSDLTKEAEDSELDTQYLRNIFRHSKRVSFSLYPAPGKTCAVEDAVSE
TLKVIGTDQVENKYSKYLEPEHLQGEKTAAESLSRACEKEMLKNYQPACVSPVACFVGNA
VCMHGGEHAEGVSEVANQGNVTPVSMGTARTEDHKGSQKGEQGDGKTVSTDIGIESELGQ
NPIKSNRSQSEPTNTEGRIFKRTNLNTVDEICFSSQSNQASKAKVIDGKEPMLHYLSGSM
ICPATCQQRPAESTCEVTGKKISKREGKQVKGNEEQATQTAGTGMPECLVTEAPEELLRG
NSDFTSFSETPDGLLCPDDIEENTSLSETDRRERSAVFIKRNDNVLVEELNNRNVSSKLR
SQGIQRSRRRVQKLPSSDEESSEDEDLPCFQTLIFGKSVNTPLQINKQVTSVVDSSPSPI
TLSHNGSHNDGKMQKMPEAELKNGYVSPGQESECSVDLFSSQSVSEESVDGAQELQEPVI
QVHTSKQVSNGNDSKETFQSCNGGLTRSKTNFKDECQEDPNMGTNLGEGYDSETSNIEDS
CGQFSQGEILTTQQKNAMQNNLKKLQEEMAVLEAVLKQQGSQNCEFLPMHRKLPHSNSEG
TLGMENMRQERENADEQKSETRLNSACVVSNLSGNVDRSPNNSSSAVRLLNPRTAEATNS
SVVAQDADKSSAQECESERSVCFPVSALHSAAGKENAASPVVTNRKKMSIVASGLNQSEH
LVVQKFARKTQSTLSNHVTEGTTHVIMKTDKELVCERTLKYFLGIAGRKWVVSYQWVIQC
FKEGRILDEENFEVRGDVINGRDHQGPKRARQCLTEKIFKDFEICCYGPFTDMTTEHLEW
MVELCGASVVKKLHLFTHAVNSTAVVVVQPDAWMENTDYRAMQQKNNVAVVTREWVLDSV
ACYERQEFHAYLVS
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtaatttctgatggagacgtacaaaatgtgctttcagctatgcagaag
aacttggagtgcccgatatgtttggatgtggtagaagagcccgtttcaacaaaatgtgat
cacatattctgcaggttctgcatgttcaaactcctcagcaaaaagaataaaggtgtgata
cagtgtcctctgtgtaagagtgaagttaccaagagaagtctgaaagaaaattccagattt
aagcaactaattgagggattgttggaaactatccgtgcgtttgagcttgacactggaata
aagtttttaaacagtcatcactttcctaaaacatccacagaagtcactgctgctgagttc
ctgcgtaaagaaagttctgtcatccagagtaagggcttcagaaacaggaagaaaagcgct
aaaggaaaaggacagaaaaactgcaccttgcctgaacctaatgtggacacacagcttaca
gacagtagagtcaaaagatgttccctaagaaacaaaatccagaagtgtgactctgaaaaa
gggatttatatagagtttggtaagatctgctctgattagctttttaaacagacaagctat
actgggttagacaaggaagtgcttcagatttcagctcaagaaaagctagaaaaacctaag
agtgctgagaaggggaatgaatattcttgcaatacacagcccaacacactgggtgctaaa
gaaattattctaccaaatgtagtaggtgaaagtgattccttgaaggaagacttgagcaag
aaaagcactcggagcatcactgagtatggcaaacctggccaagtgaatctgactgaatgc
cagagttctcctttaaatgttcttgctggagacctactcgcagagcagtgtgacggaata
aataattccagtcctgtaaggaatgaggacacatctctttttaagaacacagcagaagag
gatgcagagcaaactccgtgcaataatgaaagcaaagaatttgacttaaaagatagcttg
gagagcaggttgaataaaagcaaggaaatagatagtgttgtacaaagtgtggaaacatgt
gaacttgagaatggttcttgccatgagaaaacttctccagaggaggttctatttcagcca
gagacacttgattgtgctaccttgaatcaagtctctagaaagagactgaagcgaagcatc
cagaaagtcaatgagtggttttcaaaaagcaacgagattctgtcttccagttcttcccag
gatggttctgctggaccaggtgatgtttcaggtgaagatgtgtgtttatcagataaagat
tcctgtatttctgaaaagactgaccctctggtagattccatggaaattgcagtggttgaa
ggaaataagaggtggtcaaaacaaacagcagatagcatcaaagacaaaatatttggaaaa
acatatacaagagagaggaagtcaaatccccctattatcttgaaagatattttacctcct
atagaaaaggaagaggaagatgtggctgctaagtgcttgaataattccagcaaggacgga
ctaaaacgaaaaaggaagaccgcctgtgttctacaacctgaggatttcatcaagaaaaaa
gatatagaagaggcagatgggtgccctcagaatgctgattggtgccttggagatgctgaa
aataaaagagattatgttaatgagagtcacctctctgagaatagagaggatcatacacta
gcagaacttaaggaaaacggagaatccatatggaaaaaagcagctgaaaaggtgactagc
aagcactgtgatggggagctagaactgaataactgtgatcacaaaagcactcagaagagt
tctgcagcaaaaagatgcaagcgttctactagagccatgtgtgctctacagctagtagtg
gatagaaactctgtttcccctgatccagctgagccacagattgatagctatccaagcagt
gaagagccagggaaagttgattctgagcaaagacaagtcagacggagcaggaggcttcag
ttactttctgaagaaatgacaaaagaaacaggaaaagaagtagtgcttaagggagcaaga
acatacgacagtgatcatgaagggcctttctttggagtccgaaggaatgtgttagttcac
gcttctgaatgcaaagacctgcgtcagcaccagggtacactgagtcacaagccactggct
gatctgaagggtaatgatttggaagctggtgaaatacagattagactaaagaaatcacct
ggcactgcagaagctggaaaaagtctcttcaatcctacatcttcatgtcagcgttcagac
tgtggttcctttgcagctgatgcaagttctcaaggaggtgaaatactaggcagccctttg
cgcctacagtctccttcaaggactgttgtgcagactgcttctcacctgactgaagagacg
actgcatcatgtactacttttccctgcaatggtggacgtgacacacaaaatgtgccaggg
gatgtgacaactgaaaagttattaatggctaaaaatgtttcagatttgaccaaggaagct
gaagatagtgagttagacacacagtatctgcgaaacatatttaggcattcaaaacgcgta
tcattcagtctttatcctgctcccgggaagacatgtgcagtagaagatgctgtttctgaa
actttgaaggtaataggtactgatcaagtagaaaataagtacagcaaatatttagaacca
gaacacttacaaggagagaaaacagctgctgaaagcttgagtagggcttgtgagaaagaa
atgcttaagaactatcaacctgcttgtgttagtcctgtggcttgctttgtcggcaacgct
gtgtgtatgcacggaggggaacatgctgaaggtgtttcagaggttgcaaatcaagggaat
gtgacaccagtaagtatgggtactgctaggactgaagaccacaaggggtcacaaaaagga
gagcagggagatggaaagacagtgtcaactgacatagggatagaaagtgagttgggacag
aatccaatcaaaagtaatagaagccagagtgaaccgactaatacagaagggcgcattttc
aaaagaaccaatttaaacacagtcgatgaaatatgcttcagttcacaaagcaatcaagca
agcaaggccaaagttattgatggcaaagaaccgatgctacattatctgtccggatcgatg
atctgtcctgcaacttgtcagcaaaggcctgctgaatccacctgtgaagtcacggggaaa
aaaattagcaaaagagaaggaaaacaagtaaaggggaatgaagaacaagcaacccaaact
gctggcacggggatgccagaatgtttagttacagaggctccagaagaacttctcagaggg
aacagtgattttacaagtttctctgaaacccctgatggtttactgtgccctgatgatatt
gaagagaacaccagcctttctgaaaccgataggagagagagatctgctgtgtttataaaa
agaaatgacaatgtcctggtagaagaactaaacaatagaaatgttagttccaagctaaga
tctcaaggtattcaaagatctcgaagaagagtgcagaagctgccatcttcagatgaagaa
tctagcgaggatgaagatttaccatgttttcagacattaatatttggcaaatcagtaaac
acacctttgcagatcaataaacaagtgacttctgtggtagattcttcaccaagtcccatc
acattgtctcacaatggaagtcataatgatggtaaaatgcagaaaatgcctgaagctgag
ctaaaaaacgggtatgtttcaccaggccaggagtcggaatgctctgtcgacttattttcc
tcccagtccgtgtctgaagaatcagtcgatggagcacaggagctacaggaacctgtaata
caagttcacacatccaaacaagtgagcaatgggaacgacagtaaagaaacttttcaaagt
tgcaatggagggctgacaagaagcaaaactaacttcaaggatgaatgccaagaagaccca
aatatgggcacaaacctaggtgaaggatatgacagtgaaacaagtaatatagaagattca
tgtggacaattctctcagggtgaaatccttactacacagcagaagaacgctatgcaaaat
aacctaaaaaaactccaggaagaaatggctgtgcttgaagcagtgctgaagcagcaagga
agccaaaactgtgaatttttacccatgcataggaaactgccacattccaatagcgaggga
acgcttgggatggaaaatatgagacaagaaagagaaaatgcagatgagcagaaatctgag
accaggctaaatagtgcatgtgtcgtatcaaatctctctggaaatgtggataggagtcca
aataactcttcgtccgctgtaaggctgcttaaccctcgaactgcagaagcaacaaatagt
tctgttgtggctcaggatgctgataaaagctctgctcaagaatgcgagtcagagagaagt
gtgtgttttcctgtatctgctctgcacagtgcagctgggaaagaaaatgctgcaagtcca
gttgtgactaacaggaaaaaaatgtcaattgtggcatcgggtctgaatcaaagtgagcat
ttggtggttcagaagtttgcgagaaagacgcagagcactttgtctaatcacgttactgaa
ggaacaactcatgtcatcatgaaaacagataaggagctggtgtgtgagcggacactgaag
tactttctgggtattgcaggaagaaaatgggtagttagttaccagtgggtaattcagtgt
tttaaagaaggaaggatactggatgaggagaactttgaagttagaggagatgtaatcaat
gggagagaccaccaaggtcccaagagagctaggcagtgtctgactgaaaagatctttaaa
gactttgagatctgttgctatggacctttcactgatatgactacagaacatctggaatgg
atggtggagctttgtggtgcctctgttgtgaagaaactccatctgttcacacatgcagta
aattctactgctgtcgtggttgtgcagccagatgcttggatggaaaacacagattataga
gcaatgcagcaaaagaacaatgttgccgtggtgactcgagagtgggtattagacagcgtt
gcttgctatgagcgccaggagttccatgcttaccttgtgtcctaa
DBGET
integrated database retrieval system
