Acinetobacter vivianii: LF296_04255
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Entry
LF296_04255 CDS
T09059
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aviv
Acinetobacter vivianii
Pathway
aviv03030
DNA replication
aviv03410
Base excision repair
aviv03420
Nucleotide excision repair
aviv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aviv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF296_04255 (ligA)
03410 Base excision repair
LF296_04255 (ligA)
03420 Nucleotide excision repair
LF296_04255 (ligA)
03430 Mismatch repair
LF296_04255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aviv03032
]
LF296_04255 (ligA)
03400 DNA repair and recombination proteins [BR:
aviv03400
]
LF296_04255 (ligA)
Enzymes [BR:
aviv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LF296_04255 (ligA)
DNA replication proteins [BR:
aviv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LF296_04255 (ligA)
DNA repair and recombination proteins [BR:
aviv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LF296_04255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF296_04255 (ligA)
MMR (mismatch excision repair)
DNA ligase
LF296_04255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LF296_04255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WDZ52004
UniProt:
A0AAJ6NKD4
LinkDB
All DBs
Position
895603..897630
Genome browser
AA seq
675 aa
AA seq
DB search
MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPDCIQADTP
TNKVGGQALSKFESVTHAVPMLSLGNVFNQEDLFAFARRIDERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMP
KQGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCIPNHGLE
TMHDSLHWLTKFGFEIAERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQ
QQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWAEFRPVDAETVHLPENCPVCDSPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRATLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKSADIEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLMAAGIHWDAPTAPTRQPLN
GESWVVTGTLETMGRDEATQKLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLEIRV
MNEQEFLEFLAQYEA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaactcagttattgagcaaatgcgtcagttaattcaactgattgcaaaacat
aatcatgcttactatgtgatggatcaaccttccatttcagacagtgaatatgaccattta
tttcatcagctgaaagctttagaacaacaatatccagactgtattcaagcagataccccg
accaataaagtgggtggtcaagccttatcgaaatttgaaagtgtcactcatgcagtgcca
atgttgtcattgggcaatgtgtttaatcaggaagacctgtttgcttttgcccgtcgtatt
gatgaacgtttaccgaaccagaaagtccagtatgaagtagagctgaaactggatggttta
gcgatttcactgtggtatgaaaatggtgtgttggttcgtggtgtcactcgtggcgatggc
gagacaggcgaagatattacccagaatgtcaaaaccattcgtaatttacctaaagtattg
tcgagtcagcatcaggcgattccagagttcttggaagtacgtggcgaagtgttgatgccg
aagcaaggctttgaaaagctcaatgccgatcaggaagccaaaggcgataaaacctttgcg
aacccacgtaatgctgcggcaggcagtttaagacagcttgatccaaatattgcagcctca
cgtccattggcgttctatgcttatgggattgcgcagtgtataccgaatcatggactagag
actatgcacgatagtctgcattggttgaccaagtttggttttgaaattgcagaacgtcaa
ttcctgtgtgcttcgattgaagaagtacaacaacgttatgaacagattcaacaagaacgt
ccagatctcaaggttgaaattgatggcatggtgattaaggtggacagccttaaacagcag
caacagctcggcttcctgagtcgtgaaccgcgttgggcaacggcctataagttcccagcg
caggcggcactcaccaaagtggaaaatattgactggcaagtggggcgtacaggcacacta
acgcctgttgcacgtttagcgccagtctttgttggtggcgtgacggtatcgaatgtgacc
ttacataacattggtgaaattcaccgtttagatgtacgtgttggcgataccgtaagtgtt
taccgtactggcgatgtgattccaaaggtcgagaaggtctgggcggagtttcgtcctgtg
gatgccgagacggtgcatcttccagaaaattgtccagtctgtgattcaccagtggtcatg
ccagaaggtgaggcattggcacgttgttcaggtggtttgtattgtgcagcacagcgtatt
gaggcaattcgtcactttgtttcgcgtaaagccttggatattgaaggcttaggtgatcgt
tgggtggagtcacttctgcatctcgacctactcaaagatgtggctgatatttatcatttg
catgaacatcgcgcgactttattaaccattgaaaaaatgggtgagaaatcggttcagaac
ctgattgatgcgattgaagccagcaagaaaactactttggcacgctttatttatgctctg
gggattcgtggggtgggtgagaccacagcgcgtatgctggcgaataccttccagacgctt
gaggctctgaaatcagcggatattgaagcactcaagaaaacgcctgatgtcggtgatatt
actgctgaatggattgctgatttcttccaagcaccgcataacatcgaagtgttagatcgt
ttaatggcggcaggtatccattgggatgcaccaacagcaccaacacgccaacccttgaat
ggtgagagttgggtggtgactggaacgttggaaaccatgggacgtgatgaggcgacacaa
aagcttcaagccttgggtgcgcgtgtgagtggtagtgtttctagcaaaaccaaatgtgtg
gttgcaggcgagaaagcaggtagtaagctggataaagcgcagaaactggaaattcgcgtg
atgaatgaacaagagttcttggaatttttggcgcaatacgaggcttaa
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integrated database retrieval system
