Azotobacter vinelandii CA: AvCA_30290
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Entry
AvCA_30290 CDS
T02633
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avl
Azotobacter vinelandii CA
Pathway
avl03030
DNA replication
avl03410
Base excision repair
avl03420
Nucleotide excision repair
avl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AvCA_30290 (ligA)
03410 Base excision repair
AvCA_30290 (ligA)
03420 Nucleotide excision repair
AvCA_30290 (ligA)
03430 Mismatch repair
AvCA_30290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avl03032
]
AvCA_30290 (ligA)
03400 DNA repair and recombination proteins [BR:
avl03400
]
AvCA_30290 (ligA)
Enzymes [BR:
avl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AvCA_30290 (ligA)
DNA replication proteins [BR:
avl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AvCA_30290 (ligA)
DNA repair and recombination proteins [BR:
avl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AvCA_30290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AvCA_30290 (ligA)
MMR (mismatch excision repair)
DNA ligase
AvCA_30290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AvCA_30290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AGK13142
LinkDB
All DBs
Position
complement(3138825..3141179)
Genome browser
AA seq
784 aa
AA seq
DB search
MTDAQTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELVTPES
PTQRVGGEALAAFGQVRHELPMLSLGNAFAEEDLLDFDRNVCKGLDRGIEVVEYSCEPKL
DGLAVSLLYEDGQLVRGATRGDGSTGEDITANVRTVRNIPLRLHGQGWPAVLEVRGEIYM
PRAGFEALNARAIENGGKTFANPRNAAAGSLRQLDPKITAGRPLEFCGYGIGRFEGAEVP
QTHTSLLETLRRWGLPISRELQLARSVQDCLAYYRAIGERRQGLAYDIDGVVFKVNRLDW
QRELGFRARTPHWAIAYKFPAQEELTELLGVEFQVGRTGAITPVARLKPVQVAGVTVSNA
SLHNMDEVARLGVMIGDTVIVRRAGDVIPQIMQVVGERRPADARPVEVPRQCPVCGSAVE
RTQLVKRGKGRASLSEGAIYRCVGRLACQAQLKQAIVHFVSRRAMDIDGLGERIVEQLVD
TGLVKSPADLYILTFEQLVVLDGFAEVSSNNLLAAIAASRRPSLARFIYALGIPDVGEET
AKRLARALGSLTRIEKALPEVLIWLPDVGLEVAHEIHSFFRDEHNLTVIGQLLARGVELQ
EEGELHAEFAACASLGELLDKLDIPGIAATGAKKLAEAAGSLEAVIGLSQDWLTLNTTKG
LSEKARQALREFFAVPANVEHARAIEGQLREFGMHWESERRCAEGLPLAGQTWVLTGTLE
SMSREQGKARLESLGAKVAGSVSAKTACVVAGPGAGSKLAKAGELGVKVLDEEAFLALLR
QLES
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcccagaccgccgccgaacgcatcgcccggctgcgcagcgagatcgacgaa
cacaactaccgctattatgtgctcgatgcgccgagcgtgccggacgccgagtacgatcgt
ctgttcaacgagctcaaggcccttgaggccgaacatcccgaactggtcaccccggagtcg
ccgacccagcgcgtcggtggcgaggcgctggcggccttcggccaggtgcgccacgagctg
cccatgctcagcctgggcaatgccttcgccgaggaggatctgctcgatttcgaccgtaac
gtgtgcaagggcctggaccgcggcatcgaggtggtggagtacagttgcgagcccaagctg
gacggcctggccgtcagcctgctctacgaggacggccaactggtgcgcggcgccacccgc
ggcgacggcagcaccggcgaggacatcaccgccaatgtgcgtaccgtgcgcaacattccg
ctcaggctgcacggccagggctggccggccgtgctggaggtgcgcggcgaaatctacatg
ccgcgcgccggcttcgaggcgctcaacgcccgtgccatcgagaacggcggcaagaccttc
gccaacccgcgcaacgccgccgccggcagcctgcgccagctcgacccgaagatcaccgcc
ggccggccgctggagttctgcggctacgggatcggtcgcttcgagggggccgaggtgccg
caaacccataccagcctcctcgagaccctgaggcgctggggcctgccgatcagtcgcgaa
ctgcaactggcgcgaagcgttcaggattgcctggcctactaccgtgccatcggcgagcgc
cgccagggcctggcctacgacatcgatggcgtggtgttcaaggtcaatcgcctggactgg
cagcgcgagctgggtttccgcgcccgtaccccgcattgggccatcgcttacaagttcccg
gcccaggaggaactcaccgaactgctcggcgtcgagttccaggtcggccggaccggcgcc
atcaccccggtggcgcgcctgaaaccggtgcaggtggccggtgtcaccgtgtccaacgcc
agcctgcacaacatggacgaggtggcgcgcctcggcgtgatgatcggcgacacggtgatc
gttcgccgcgccggcgacgtgattccgcagatcatgcaggtggtcggcgagcgccggccg
gccgatgcccgtccggtcgaggtgccgcggcagtgtccggtgtgcggctcggcggtggag
cgcacccagttggtcaagcgcggcaagggcagggcctcgctcagcgaaggagcgatctac
cgctgtgtcggtcgcctggcctgccaggcccagctcaagcaggcgatcgtccacttcgtc
tcgcgacgcgccatggacatcgacggcctcggcgagcggatcgtcgagcaactggtggac
accggcctggtgaagtcgccggccgatctctacatcctgaccttcgaacaactggtggtg
ctggacggcttcgccgaggtctccagcaacaatctgctggcggccatcgccgccagccgc
cggccgagcctggcgcgcttcatctacgcgctgggcattcccgatgtcggcgaggagacc
gccaagcggctggcccgcgcgctcggctcgctcacgcgcatcgagaaggccctgcccgag
gtgctcatctggctgccggacgtcggcctggaagtcgcccacgagatccacagcttcttc
cgggacgagcacaacctcacggtgatcgggcagttgctggcgcgtggcgtcgaactgcag
gaggaaggcgaattgcacgcggagttcgccgcctgcgccagcctgggcgaactgctcgac
aaactggacattccggggatcgccgccaccggcgcgaaaaagctcgccgaggcggcgggc
agcctggaggcggtgatcggcctcagccaggactggctgaccctgaacacgaccaaaggg
ctgtcggaaaaggccaggcaggcgctgcgcgagttcttcgccgtccccgccaacgtcgag
cacgcccgtgccatcgaggggcaattgcgcgaattcggcatgcactgggaaagcgagcgc
cgctgcgccgagggcctgcccctggccgggcagacctgggtgctgaccggcaccctggag
tccatgagccgcgagcagggcaaggcgaggctggaaagcctcggcgccaaggtggccggc
tcggtctcggcgaagaccgcttgcgtggtcgccggtcccggagccggctcgaagctggcc
aaggccggcgaactgggggtgaaggtgctcgacgaggaggctttcctcgcgctgctgcgg
cagttggagagctga
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