Agrobacterium vaccinii: HRR99_09890
Help
Entry
HRR99_09890 CDS
T08171
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq03030
DNA replication
avq03410
Base excision repair
avq03420
Nucleotide excision repair
avq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRR99_09890 (ligA)
03410 Base excision repair
HRR99_09890 (ligA)
03420 Nucleotide excision repair
HRR99_09890 (ligA)
03430 Mismatch repair
HRR99_09890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avq03032
]
HRR99_09890 (ligA)
03400 DNA repair and recombination proteins [BR:
avq03400
]
HRR99_09890 (ligA)
Enzymes [BR:
avq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HRR99_09890 (ligA)
DNA replication proteins [BR:
avq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HRR99_09890 (ligA)
DNA repair and recombination proteins [BR:
avq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HRR99_09890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HRR99_09890 (ligA)
MMR (mismatch excision repair)
DNA ligase
HRR99_09890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HRR99_09890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_PaaD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UHS61802
LinkDB
All DBs
Position
circular:complement(1979068..1981242)
Genome browser
AA seq
724 aa
AA seq
DB search
MSQDQTPVEKLSELEASAELAFLAAELARHDALYHGNDAPEVSDAEYDALKRRNDAIEAA
FPDLVRADSPSKKVGFAPLPTFAPIVHARPMLSLGNAFSDEDVQDFVASVYRFLGNLPDD
SIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANILTITEIPNSLPKGVPDV
VEVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTASGSLRQLDATVTAKRKLRFFAYAL
GEVSDGGQPTRIADTQFGIVEKFREWGFPVNPFMKRFTSAQQLIEHYQEIGIARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVEKIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNNGERIRPEDHDIRVGDTVIVQRAGDVIPQVLDVL
LEKRAADSVAYEFPRKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAMEHLKHFVS
RNAFDIEGLGTKQIDFFFESEDPALSVKTAPDIFTLKKRQEDSHLTKLENIDGFGKTSVK
KLFDAIDARREIDLNRLIFALGIRHVGETTAKLLARSYGTYQHFEEAMKAAADVTGDAWN
ELNSIDGIGEVVARAIVEFYKEPRNLDVIDRLMKELRPKEAEQPTTDGSPVAGKTVVFTG
SLVKFTRDEAKARAESLGAKVAGSVSKKTDYVVAGPGAGSKLDKARELGVQTMDEDEWLA
LIAG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaccagacccctgttgaaaaactgtccgagcttgaggcgtctgccgagctt
gcctttctggcagcagagcttgcgaggcatgatgcgctctatcacggcaatgatgcgcct
gaagtatcggacgccgaatatgatgcgctgaagcgccgcaacgacgccatcgaggcggcg
ttccccgatcttgtcagggcggacagcccatcgaagaaagtcggctttgcgcctctgcct
accttcgcgcccatcgtccatgcgcggcccatgctgtcgctcggcaatgcgttttccgat
gaagacgtgcaggacttcgtggcatcggtctatcgcttcctcggcaacctgccggatgat
tcgattgcctttaccgcggagccgaagatcgacggcctctcgatgtcgatccgctacgag
aacggcaagctgaaaacggcggcgacccgtggcgatggcacgacgggcgagaacgtgacc
gccaatatcctgaccatcacggaaatccctaacagcttgcccaagggcgtgcctgacgtg
gtggaggtgcgcggtgaggtctatatggccaagagcgattttctggcactgaacgcgcag
atggaagccgagggcaagcagacctacgtcaacccgcgcaacacggcctccggctcgctg
cggcagttggatgcgactgtgacagccaagcgcaagctgcgtttcttcgcctatgccttg
ggtgaggtatccgatggcggccagccgacgcgcattgccgatacgcaattcggcatcgtg
gaaaaattcagggaatggggctttccggtgaaccccttcatgaagcgattcacttccgcc
cagcaactgattgaacactatcaggaaatcggcatcgcgagacctgatctcgattacgat
atcgatggcgttgtctacaaggtcgaccgtctggatttgcaggaacgccttggcttccga
tcccgcagcccgcgctgggcgaccgcgcataagttcccggcggaacaggctttcacgact
gtcgaaaagatcgagatacaggttggccgcaccggtgccttgacgccggttgcgcggctg
acgccgatcacggtcggcggtgtcgtcgtcaccaacgccacgctgcacaatgccgattac
atcgaaggcattggcaataatggcgagcgcattcgccccgaggatcacgatatccgcgtg
ggtgatacggttattgtgcagcgggcgggggatgtcattccgcaggtgctggatgttctg
ctggaaaagcgggcggcggattcagtggcctatgagttccctaggaaatgcccggtctgc
ggcagtcacgccgtgcgtgagcgcaatgagaaaaccggcaagctggattcggtgacccgc
tgcaccggtggtttcgtgtgccgtgcgcaggcgatggagcatctcaagcatttcgtctcg
cgcaacgccttcgatattgaaggtctcggcaccaagcagatcgatttcttcttcgaaagc
gaagatccggccctttcggtgaaaaccgcacctgacatcttcacactgaaaaagcggcag
gaagattcgcacctcacaaagcttgagaacatagacggcttcggcaagaccagcgtcaag
aagctgttcgacgccattgatgcgcgccgtgagatcgaccttaacaggctgatcttcgcg
ctcggcatccgccatgtgggcgagacgacggcgaaactgctggcgcgcagctatggcacc
tatcagcatttcgaagaagcgatgaaggccgccgctgacgtgaccggtgatgcctggaac
gagctcaacagcatcgacggcattggcgaagtcgtggcccgggccatcgtggagttctac
aaggagccacgtaacctcgacgtcatcgaccggctgatgaaagagctgcgcccgaaggaa
gccgaacagccgacgacggacggcagcccggtggcaggcaaaacggtagtcttcacaggt
tcacttgtgaaattcacccgcgacgaagcaaaggcccgtgccgaaagcctcggtgccaag
gtggctggttccgtgtccaaaaagacggactacgtggtggccggaccgggtgcgggctcc
aagctggacaaggcgcgagagcttggcgtgcagacgatggatgaggatgagtggctggcg
ctgattgcggggtag
DBGET
integrated database retrieval system
