Aeromonas veronii B565: B565_2978
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Entry
B565_2978 CDS
T01462
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avr
Aeromonas veronii B565
Pathway
avr03030
DNA replication
avr03410
Base excision repair
avr03420
Nucleotide excision repair
avr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B565_2978
03410 Base excision repair
B565_2978
03420 Nucleotide excision repair
B565_2978
03430 Mismatch repair
B565_2978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avr03032
]
B565_2978
03400 DNA repair and recombination proteins [BR:
avr03400
]
B565_2978
Enzymes [BR:
avr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B565_2978
DNA replication proteins [BR:
avr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B565_2978
DNA repair and recombination proteins [BR:
avr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B565_2978
NER (nucleotide excision repair)
GGR (global genome repair) factors
B565_2978
MMR (mismatch excision repair)
DNA ligase
B565_2978
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B565_2978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
AmiA-like
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEB51013
LinkDB
All DBs
Position
complement(3357940..3360303)
Genome browser
AA seq
787 aa
AA seq
DB search
MSDTLSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELKTPASPSV
RVGGQPLTAFSQVRHEIPMLSLDNVFSSEELQAFEQRMSDRLKRDVRFTFCCEPKLDGLA
VSLLYVNGQLVQAATRGDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFG
RLNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVCGSDIVQEKKI
VQQKTKTLEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVIEQLVDGGLVK
HPADLFRLSVDDFLKLDGFAEVSAKNAFDAIQAKIGTTSSIDFLFGLGIPSVGQVVAERL
IVELGCLDNIISAPRGIISQINGIGLDIDAEISDYFSAASVSDSVMELADVMGVERSGIS
ISRMYKRKFSMAKIIEGLNIDGVAKTFSEAISKEITLDQLCNGLQHGDLVGITTTAGTSI
SKQKIDAVVKGIKEKKPLLDAVKIYVDKHALLDVDDLLDSEPAEKSDSFIAGKSFVITGS
FTFMSRDKLNSKLKELGGESKTSVSKNTDMLIMGDKAGSKLKKATELGIKIINEDELRSL
LESENGI
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccctctcccgccaccgtcaattgtgtgaactgcttaccgaatatggtcac
cagtactatgtgctggataaccccacagtgccggatgccgaatacgatcgcctgatgcgc
gaactgatcgcgctggaggctgaccaccccgagctgaaaacaccggcgtcgcccagcgtg
cgggtcggcggccagccgctgacggcgttcagtcaggtgcgtcacgagatccccatgctc
agtctggataacgtctttagcagcgaagagttgcaggcgttcgaacaacggatgagcgat
cgcctcaagcgtgacgtgcgttttaccttctgctgcgagcccaagctcgatggtctggcg
gtgagcctgctctatgtaaatggtcagctggtgcaggcggccacccggggcgatggcgcc
accggtgaggagatcaccgagaacgtgcgtaccatcaaggccattccgctcgcattgcgg
ggctctggctggcccgatcggctggaggtgcgtggcgaagtctttatgcccaaggccggt
tttgaggcgatgaacgccaaggcgctggcagcgggcgagaaggtatttgtcaacccgcgc
aatgccgctgctggcagcctgcgtcagctcgattcacgcatcaccgccagccgtcccctg
agcttttacgcttacggtgtcggtgttggcggcgagctgctcggtgactctcactttggt
cgcctcaatcagctcaaagcgtgggggctgccgcttagtcccgaggtgaagctcaaagag
ggggctgccggttgtcaggcgttccacgacgacattctggcccgtcgtggcgagctccct
tacgagatcgacggcgtggtctacaaggtcgatgccatccccctgcaagaggagctcggc
tttgtggcccgcgccccgcgctgggcgactgcccacaagtttccagcgcaggaggagatg
accctgcttgagaacgtcgagttccaggtcggccgcaccggcgccgtgacgccggtggcc
aagcttaaaccggtgtttgtcggcggcgtgaccgtttccaacgccactttgcacaacgcc
gacgagatcgagcgtcttggcgtcatggtcggcgataccgtgatcgtgcgccgggcaggg
gatgtgatcccgcagatcgtcgccgtggtggaggcgcagcgcccaagcgacgcccgcgcg
atcctcttcccgaccgagtgcccggtgtgcggttcggatattgttcaagagaaaaagatc
gtccaacaaaaaaccaaaacactcgaaaaaatacttgcgactcgtaaatgtacgggaggg
ttaaattgtctagctcaagtcaaagaatctctcaaacatttcgttagccgtaatgcggtt
gatatagaaggtgttggtgataaagtcattgaacagttagtagatggtggattagttaaa
catccagcagatctatttagattgagtgttgatgattttttaaaattagatggttttgct
gaagtttcagcaaaaaatgcatttgatgctatccaggctaaaattggtacaacatcctct
atcgactttttatttggattgggaattccatctgttggtcaagttgtagcagaaagactg
attgttgagcttggatgcttggataatataatttcagcaccgagaggaattattagtcag
ataaatggtatcggtttagatattgatgcggaaatatcagactattttagtgctgcttca
gtaagcgattcggttatggaactagccgatgtaatgggtgtggaaagatctggaatatca
atatccagaatgtataaaagaaaattttcaatggcaaaaatcattgaaggtttaaatatt
gatggcgttgctaagactttctctgaagctatatctaaagaaataactttggatcagttg
tgcaatggtttacagcatggtgatttggttggtatcacaaccacagctggcacaagtatc
agtaagcaaaaaattgatgcagttgtcaaaggtattaaagagaagaagcccttgcttgat
gcggtcaagatctatgttgataaacatgcactattggatgttgacgatttattggattct
gagccagcggaaaaatcagatagttttatcgcgggtaagtcatttgtaatcactggcagt
tttacgttcatgtcgagggataaattgaattcaaaactaaaggagcttggtggtgaatct
aaaacttcagtgtcaaaaaatacagatatgttgattatgggtgataaggctggtagcaaa
ttgaaaaaagcgaccgagctaggtataaaaatcattaatgaagatgaattgcgttctctt
ctggagtctgaaaatggaatttaa
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