Avibacterium volantium: NCTC3438_00929
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Entry
NCTC3438_00929 CDS
T06626
Symbol
rlmC
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
avt
Avibacterium volantium
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avt03009
]
NCTC3438_00929 (rlmC)
Enzymes [BR:
avt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
NCTC3438_00929 (rlmC)
Ribosome biogenesis [BR:
avt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC3438_00929 (rlmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_32
Methyltransf_12
UPF0020
ApbA
PALP
Methyltransf_11
GFO_IDH_MocA
zf-CCCH_4
YjeF_N
Motif
Other DBs
NCBI-ProteinID:
VEB23331
UniProt:
A0A3S4J8Z3
LinkDB
All DBs
Position
1:929936..931114
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AA seq
392 aa
AA seq
DB search
MSAMPVCPHFMAGQCRSCQWLEMPYTKQLDKKKAHLVQQLNGLDQSQLKWLPAYTSAQQG
FRNKAKMVVSGSVERPILGILTDPNDPQSAVDLSDCLLYPAHFAEIFAQLKTFIGRAGLV
PYHIAKRKGELKYILLTESQSNGTLMLRFVLRSTAKLALIQRELPQLLANLPQIKVVSLN
IQPKHAAILEGEEEIFLTEQKQLAESFNKIPLFIRPQSFFQTNPKVAEGLYGTAQQWIKD
LPISKIWDLFCGVGGFGLHCAAILQQKGVNVQLTGIEISPSAIASASLSAEKLGLAQVKF
QSLDAANFALAQNEKPDLLIVNPPRRGIGKELAQFLNKLQPHFILYSSCNAVSMGKDLQE
LANYQAQKIQLFDMFPNTAHYEVLVLLERSGG
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaatgccagtttgtccgcactttatggcaggacaatgccgttcttgccaatgg
cttgaaatgccttataccaaacagcttgataagaaaaaagcccatttagttcaacaactt
aatgggcttgatcaatcacagcttaaatggttgccagcttatacttctgcgcaacaaggt
tttcgtaataaagcgaaaatggtggtgagcggttcggtggaacgcccgattttaggcatt
ttgaccgatcccaatgatccacaaagtgcggtggatttatccgattgtttgctctaccct
gcacatttcgctgagatttttgcccaattaaaaacctttatcgggcgcgcgggcttagtg
ccttatcatatcgcaaaacgcaaaggtgaactgaaatatattttgcttaccgaaagccaa
agtaacggcacattaatgttgcgttttgtgttgcgatctaccgccaaactggctcttatt
cagcgagaattaccacaattattggcaaacttgccacaaataaaggtggtgagcctgaat
attcagcctaaacacgcggcaattttagaaggtgaagaagaaatttttctcacggaacaa
aagcagctcgctgaaagttttaacaaaattccgttatttattcgcccacaaagctttttc
caaaccaatccaaaggtggcagaaggcttatacggcacggcacagcaatggattaaagat
cttccgattagcaaaatctgggatctgttttgcggcgtaggtggctttggtttacattgt
gcggcgatcttgcaacaaaaaggcgtaaacgtgcaattaactggcattgaaatttcccca
tcagcgattgctagtgctagcttgtcagcagaaaaattggggttagcgcaggtgaagttt
cagtccttagatgcagcaaatttcgctttagcacaaaatgaaaaaccagatttgctgatc
gtcaatccgccacgccgtggcatcggcaaagagttggctcaatttctcaataaattacaa
ccgcactttattttatattccagctgcaatgcggtttcaatgggcaaagatttgcaagaa
ttagccaactaccaagcacaaaaaatccaactttttgatatgttccctaatacggcgcat
tatgaagtgttggtgttgttagaacgctcagggggatga
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