Agrobacterium vitis VAT03-9: RvVAT039_03380
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Entry
RvVAT039_03380 CDS
T08809
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03030
DNA replication
avv03410
Base excision repair
avv03420
Nucleotide excision repair
avv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAT039_03380 (ligA)
03410 Base excision repair
RvVAT039_03380 (ligA)
03420 Nucleotide excision repair
RvVAT039_03380 (ligA)
03430 Mismatch repair
RvVAT039_03380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avv03032
]
RvVAT039_03380 (ligA)
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_03380 (ligA)
Enzymes [BR:
avv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RvVAT039_03380 (ligA)
DNA replication proteins [BR:
avv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RvVAT039_03380 (ligA)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RvVAT039_03380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RvVAT039_03380 (ligA)
MMR (mismatch excision repair)
DNA ligase
RvVAT039_03380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RvVAT039_03380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
DUF4796_N
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
BCH63122
LinkDB
All DBs
Position
1:complement(338610..340769)
Genome browser
AA seq
719 aa
AA seq
DB search
MADALIPVEDLSEEQAGQELIRLAAAIAHHDALYHGNDQPEISDADYDALKRRNDAIEAR
FPTLVRSDSPSQRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDN
SIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDV
VEVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSTMPAETQSGMVDAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNADYIEGIGNGGERIREEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRP
ESSAKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFD
IEGLGTKQVDFFFDSEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDA
IDARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSI
DGIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERF
TRDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALIGG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcattgatcccggtcgaagacctcagcgaagagcaggccgggcaggaactc
atccggttggccgccgctattgcccatcatgatgcgctttatcacggtaacgaccagccg
gaaatttccgatgctgattacgatgccttgaagcggcgcaacgatgccatcgaggcgcgg
tttccgactttggtgcgcagcgatagtccgtcgcagcgggtgggtgcggcacctgccggg
attttctcgcagatcacccatgcaaggccgatgctgtcgctggacaacacgttttccgat
gaggacgtggcggatttcgtggcctcggtctatcgctttttgggcgtgatgccggataat
tccatcgcctttaccgccgaaccgaaaatcgacggcctgtcgatgtcgatccgctatgag
aaccgcaaactcaagacggcggcgacgcgcggtgatggcacgacgggcgaaaacgtcacg
gccaatatcctgaccatcaaggaaatcccgaccgagcttcccgctgatgcccccgacgtg
gtggaggtgcgtggcgaggtctatatggcgaaaagcgactttctggcgctgaacgcccag
atggaggccgagggccgccagacctatgtcaacccacgcaatacggctgccgggtcgctg
cgccagctcgacgcgaaagtcaccgccagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgagcaccatgcctgccgagacccaatcgggcatggtggatgcctttaagcgc
tggggcttcccggtcaatccgctcactcgtcgtttgacatcggttgaggagatcatcgcc
cattaccgtgagatcggccttcagagagccgatctggattatgacatcgatggtgtggtc
tataaggttgaccggctggatttgcaggcccggctcggctttcggtcgcgctcgccacgc
tgggcgacagcccacaaattcccggcggagcaggcctttaccacagtggaagccatcgac
atccaggtgggccgcaccggcgcgctgacgccggtggcgcggctggagccgattaccgtc
ggtggcgtggtcgtgaccaatgcgaccctgcacaatgccgattatatcgagggtatcggc
aatggcggcgagcgtatccgcgaggaaggccatgacattcgcatcggcgataccgtgatc
gtccagcgggctggtgacgtcattccgcaggtgctggatgtggttctggaaaagcggcct
gagagttcggcaaagtacgaatttccgaaaacctgcccggtttgcggcagccatgcggtg
cgcgagaaaaacgagaagaccggcaagctggattccgtgacccgctgcacgggcggcttc
gtctgctcggcgcaggccaaggagcacatcaagcatttcgtctcccgcaatgccttcgac
attgaagggctgggcaccaagcaggtggacttcttcttcgacagtgaagacccagcgctg
atgatccgcactgcgccggatattttcaccctcaaacagcggcaggaagcttcgtcactg
acccgccttgaaaatattgacggttttggccgggtcagcgtgcgcaaactgttcgatgcc
atcgatgcgcgccgcgagattgccctcaaccgcttcatcttcgcgcttggcatccgtcat
gtcggcgaaaccaccgccaagctgctggcccgctcctatggctcctacgcggcgtttgct
gacgccatgcaagaggccgccccaaaatttggtgaggcctggaacgagttgaacagcatt
gatggcatcggcgaagtggtcgcggcctccatggttgaattcttcaaggaacctcgcaat
cttgaagttgtctcccgcttgttgaaggaagtgactccactggatgcagaagccgttacg
gcaagcgatagcccggtggccgggaaaaccgtggtgttcaccggctcactggagcgcttt
acccgtgatgaggcgaaggccagggccgaaagcctcggtgccaaggtggccggatcggtc
tcgaaaaagaccgattacctggtcgccggaccgggcgctggttccaagctggacaaggcc
cgtgaggtgggcgtgactgtcatgaccgaggacgagtggctggcgctgatcggcgggtga
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