Agrobacterium vitis VAT03-9: RvVAT039_11230
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Entry
RvVAT039_11230 CDS
T08809
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RvVAT039_11230 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_11230 (nth)
Enzymes [BR:
avv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RvVAT039_11230 (nth)
DNA repair and recombination proteins [BR:
avv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RvVAT039_11230 (nth)
Prokaryotic type
RvVAT039_11230 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BCH63907
LinkDB
All DBs
Position
1:complement(1170586..1171350)
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AA seq
254 aa
AA seq
DB search
MKSSTQTLKKSISSPSQPKPAGRKVAVRSAYSKAELEEIFRRFSVQRPEPKGELEHVNPF
TLVVAVALSAQATDAGVNKATRALFAVADTPEKMVALGEEKVRDYIKTIGLFRNKAKNVI
ALSQKLIDDFGSEVPKTREELVTLPGVGRKTANVVMSMAFGIPTMAVDTHILRIGNRIRL
APGKTPDEIEEILMRIIPKHYLFHAHHWLILHGRYCCKARKPECERCVIADLCKSPEKTC
DVPAPLVELPPQIL
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccagcacgcaaactttgaaaaagtcaatttcttccccctctcaacccaagcca
gcgggacgaaaagtcgcggttcgtagcgcctattccaaggccgagctggaggaaatcttc
cggcggttttccgtgcagcgcccggaaccgaagggcgagctggagcatgtcaacccgttt
acccttgtcgtcgccgtagcgctctcggcgcaggcaaccgatgcgggggtgaataaagca
acccgcgccctgtttgccgtggccgatacgccggaaaaaatggtggcgcttggcgaagag
aaggtgcgcgattatatcaagaccatcggcctttttcgcaataaggcgaagaatgtcatc
gcgctcagccaaaagctgatcgacgatttcggcagcgaggtgccaaaaacccgcgaagaa
ctggtgacgctgccgggcgtcggccgcaagaccgccaatgtggtgatgtccatggccttc
ggcattccgaccatggccgtcgatacgcatattttacggatcggcaaccgcattcggctg
gcacccggcaagacgccggatgagatcgaggagatcctgatgcggatcatccccaagcac
tatcttttccatgcccatcactggctgatcctgcatgggcgctactgttgcaaggcccgc
aagccggaatgcgagcgctgcgtgattgccgatctgtgcaaatcgccggaaaagacctgc
gacgttcccgcaccactggtggagctaccgccgcagatcctttga
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