Agrobacterium vitis VAT03-9: RvVAT039_12130
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Entry
RvVAT039_12130 CDS
T08809
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv01501
beta-Lactam resistance
avv01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RvVAT039_12130
01503 Cationic antimicrobial peptide (CAMP) resistance
RvVAT039_12130
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avv02000
]
RvVAT039_12130
01504 Antimicrobial resistance genes [BR:
avv01504
]
RvVAT039_12130
Transporters [BR:
avv02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
RvVAT039_12130
Antimicrobial resistance genes [BR:
avv01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RvVAT039_12130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
BCH63997
LinkDB
All DBs
Position
1:1305624..1308758
Genome browser
AA seq
1044 aa
AA seq
DB search
MSKFFIRRPIFAWVIAIVIMLGGGLAITSLSISQYPEIAPPSVKISATYTGASADTVKKT
VTQIIEDGMTGLDGLTYMTSSSTSGSSSITLTFDNSIDPDMAQVQVQNKLQLVESQLPSV
VQNLGIEVTKSTSSILLVGALVSTDGKRTSADLGDIFSAQIEDQVKRLEGVGNINAFGSA
FAMRVWLDPFKLRKFQLTPADVTSAIEAQNTQISVGSVGGLPAVEGQQINVTMTAQSQLT
TVSDFERIILKVDTSGANVRLSDVARVEIGQESYTSTSRSNRQAASGFAVNLATGANALD
TASRVKAKLAQIAPALPQNVSIIYPYDTTPFVSLSIEKVVHTLIEAIVLVFFVLLIFLQN
LRATFIPMIAVPVVLLGTFGILALTGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMT
EEGLPPLEATQKSMGEITGAIVGIALVLTAVFVPMAFFGGSTGIIYRQFSVTIISAMLLS
AVVALVLTPALCATILKPIDKSHRKTTGPAAWFNRNFDRTTNGYVWSIGHLLRRPLRLLL
IFAVLVGGCAWLFLRLPSSFLPQEDQGVLMTIVQLPNGSTSAQTGEVMKKVEDYLLDKES
SVVDSVFAVNGFSFNGSGQNYGLVFAKLKDFDLRKKPDMAASAIVQRAMGYFMTIREAQV
FPILPPAIQGMGNSSGFSLYLVDNGNHGSEALSIAAKQLLAQANSSGVITAMRPNDRDEE
SQVKLILDQEKLSAMGVTISDANSMLTTIFAGTNVNDFTLNNKIKKVYVQADAPYRMQAE
DIKYWDARNSSNEMVPFSSFTDAKWVNGLPSISAFNAVTAFSLDGSAAPGVSSGDAMNEV
ERLVSKMEGGYTVAWQGISYQERLSGSQAPLLYALSVLIVFLCLSALYESWSIPFSVIMA
VPIGVLGAVAAATLMGQDNDVYFKVGLLTTIGLAAKNAILIVEFAKERQEHGLSLMDATL
EAARLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPSF
FVIVRRASNRAKAKEELLQAEQKR
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaattcttcatacggcgaccgattttcgcctgggtgatcgcgatcgtgatcatg
cttggcggcgggctggctatcaccagcctgtcgatttcgcaatacccggaaatcgcacca
ccatccgtaaaaatcagcgccacttatacaggtgccagcgccgataccgtcaagaagacc
gttactcagatcattgaagacggaatgacagggctggatggcctgacatatatgacctct
tcatcgacgtctggatcgtcatccatcacgttgaccttcgacaacagcatcgatccggac
atggctcaggtccaagtccagaacaagctgcaactggtggaatcgcaattaccgtccgtg
gtgcagaatctcggcatcgaagtgacgaaatcgacttccagtattctgttggtgggtgcc
cttgtgtccacggatggcaagcgcacatcggcggacctcggcgatatcttttccgcccag
attgaagaccaggtgaaacgcctggaaggcgtcggcaatatcaatgcattcggctccgcc
tttgccatgcgcgtctggcttgatccgttcaaattgcgcaagtttcagctgacacctgca
gatgtcacctcagccattgaagcacagaatacccagatttctgtcggatcggtcggcggt
cttcctgccgtggaaggacagcagatcaacgtcacgatgacagctcagagccagctgacc
acggtgtcggactttgagcggatcatcctgaaggtcgacaccagcggcgccaatgtccgc
ttgagcgatgtggcacgggttgaaatcggccaggaaagctacacctccacctcgcggtcg
aaccgtcaggcggcatccggcttcgcggttaatcttgcaacgggagcgaatgctctcgat
acggcgtcgcgtgtaaaggccaagctcgcgcagatcgctccggcattgcctcagaacgtc
agcatcatctatccttacgacacaacgcctttcgtatcactttcaatcgaaaaggtcgtt
catacgctgattgaagccatcgtcctcgtcttcttcgtcttgttgatcttccttcagaac
ctgcgggcgacattcattccgatgatcgccgtgcctgtcgttttgcttggtacgtttggc
attctggctctgacgggatattcgatcaacacactgaccatgttcgccatggtgcttgcc
atcggccttctcgtcgatgatgccatcgtcgtggtggaaaatgtcgaacgcatcatgacc
gaagagggcctgccccccctggaggcgacccagaaatccatgggtgaaatcactggcgcc
atcgtcggcatcgccctggtgctgacggccgtgttcgttcccatggcgtttttcggtggc
tcgactggcattatctatcgtcagttttcggtcaccatcatttcggcgatgctgctttca
gcagttgtcgcactggtcctgacacctgcgctttgcgcgacgatactgaaaccgatagac
aagagtcataggaagacgaccggtccagccgcgtggttcaatcgcaatttcgaccgcacg
accaatggctacgtctggtccattggtcatctgctgaggcgcccgctccggcttctgttg
atattcgcggtactggtcggcggttgcgcctggctgttcctgcgcctgccctcctccttc
cttccgcaggaagaccagggcgtgctgatgacgatcgtccagcttccaaatggctcgacc
tcggcgcagacgggcgaagtgatgaaaaaagttgaagattacctgctcgacaaggaaagc
agcgttgtcgattcggttttcgccgtcaatggtttcagcttcaacggaagcggccagaac
tatggcctggttttcgccaagctgaaggattttgacctgcgcaagaagccggatatggcc
gcaagtgccatcgtccagcgagcgatgggttatttcatgaccattcgtgaagcgcaggtc
tttccgattctgccaccggccattcagggcatgggcaattccagcggtttttccttgtat
ctcgtcgataacgggaaccacggctcggaagcactgtctatcgctgcgaaacaactgctg
gctcaggccaatagcagcggcgttatcaccgccatgcgcccgaacgaccgcgatgaggaa
agtcaggtcaagcttattctcgaccaggaaaaactgagcgccatgggcgtgacgatttcc
gacgccaactcaatgctgacgaccattttcgccggcaccaatgtcaatgacttcacgctg
aacaacaagatcaagaaggtctatgtccaggccgatgcaccctaccgcatgcaggccgag
gacataaaatattgggatgcccgcaattcgagcaatgagatggtccccttctcatcgttc
acggacgcaaaatgggtcaacgggcttccttcgatttcggctttcaacgctgtcaccgcc
ttctcgctcgacggttctgcggcacccggcgtcagctccggcgacgcaatgaatgaagta
gaacgtctggtttccaagatggaaggcggctacaccgtcgcttggcagggcatctcctat
caggaaagactgtcaggctcgcaggcgcccttgctctacgccttgtcggtgttgatcgtc
ttcctatgcctgtcggcactctacgaaagctggtcgatccccttctcggtgatcatggcc
gtgccgatcggtgttcttggtgccgttgcggcagcaactttgatggggcaggacaacgac
gtctacttcaaggtcgggctgctcaccacaatcggtctggcggcaaagaacgccattctg
attgtcgagtttgccaaggagcggcaggaacacggattgagcctgatggatgcgaccctg
gaggcggcaagactccgtcttcggccgatcatcatgacatcactcgccttcattcttggt
gtcgttccgctggcaattgccactggcgcgggctctgcagcgcagaatgcaatcggcatc
ggcgtactcggtggtatgctttctgcaacactgctcggaattttctttgttccatccttt
tttgtcattgtcagacgtgcttcaaaccgtgcaaaagccaaagaagagctgttacaagct
gagcagaaacgatag
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integrated database retrieval system
