Aeromicrobium wangtongii: NQV15_12105
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Entry
NQV15_12105 CDS
T09548
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
awn
Aeromicrobium wangtongii
Pathway
awn03030
DNA replication
awn03410
Base excision repair
awn03420
Nucleotide excision repair
awn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
awn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQV15_12105 (ligA)
03410 Base excision repair
NQV15_12105 (ligA)
03420 Nucleotide excision repair
NQV15_12105 (ligA)
03430 Mismatch repair
NQV15_12105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
awn03032
]
NQV15_12105 (ligA)
03400 DNA repair and recombination proteins [BR:
awn03400
]
NQV15_12105 (ligA)
Enzymes [BR:
awn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQV15_12105 (ligA)
DNA replication proteins [BR:
awn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQV15_12105 (ligA)
DNA repair and recombination proteins [BR:
awn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQV15_12105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQV15_12105 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQV15_12105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQV15_12105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UUP12596
LinkDB
All DBs
Position
complement(2460993..2463098)
Genome browser
AA seq
701 aa
AA seq
DB search
MGNDDELRQRHKELAETLMEHRERYYVEDSPTISDAEYDQLMRELEGLEEQLPELRTPDS
PTQTVGGYASSSFAAYEHRERLLSLDNAFSIEELEAWHGRLIREGVDDAEFLCELKVDGL
AISLTYENGRLTRGVTRGDGRVGEDVTNNVRTIKVIPHELTPSDEYPIPAYVEVRGEVFF
PTKEFEEFNTAWAESGKTPFSNPRNAAAGTLRMKDSSVTASRPLSMVCHGLGYREGFNPE
RQSEAYDALKAWGLPTSDRAKVVKDLAAVEEFIAYYGEHRHDVVHEIDGVVVKVDQVDRQ
RRLGATSRAPRWAIAWKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMEPIRVAGSTVEMAT
LHNQHEVKRKGVRIGDMVVLRKAGDVIPEIVGPVVALRDGSEREFVFPTECPSCGTPLAP
SREGDKDIRCPNTRSCPSQLRERLTHVGGRGAFDIEVFGWEGATALLDAGVLTDEGGLFA
LTAEQLMGVPLYTRAAKKKEIEAGSGDRVLSANGIALLKNLQTAKTQPLWRVLVALSIRH
VGPTAARALAAHFGTMEAIEEVLTVDDPVQTLSAVDGVGPTIAEAVVDWFSVDWHADIVR
QWRDAGVVMADERDESIPRTLEGLTIVVTGSLERFTRDSVKETIIAHGGKASGSVSKKTD
YVVVGDNAGTKADKARDLGRPILDEEGFERLLAEGPPTADA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatgacgacgagctgaggcagcggcacaaggagctcgcggagacgctcatggag
catcgcgagcggtactacgtcgaggactcgccgacgatctccgatgccgagtacgaccag
ctcatgcgcgagctggagggcttggaggagcagctgcccgagctgcgcacgcccgactct
ccgacccagaccgtcggcggctacgcctcgtcctcgttcgcggcgtacgagcaccgtgag
cgactgctcagcctcgacaacgccttctcgatcgaggagctcgaggcgtggcacggccgg
ttgatccgcgagggcgtcgacgacgccgagttcctctgcgagctcaaggtcgacggattg
gcgatctccctgacgtacgagaacggcaggctcacccgcggtgtcacccgcggcgacggc
cgggtgggcgaggacgtcacgaacaacgtccgcacgatcaaggtcatcccgcacgagctc
acgccgtcggacgagtacccgatcccggcctatgtagaggtccgcggcgaggtgttcttc
ccgaccaaggaattcgaggagttcaacaccgcgtgggccgagtcgggcaagactccgttc
tccaacccccgcaacgccgccgccggcacgctgcgcatgaaggactcctcggtcaccgcg
agccgtccgctgtcgatggtctgccacggcctcggctaccgcgagggattcaaccccgag
cggcagagcgaggcctatgacgcgctcaaggcatggggcctgcccaccagcgaccgagcg
aaggtggtcaaggatctcgccgcggtcgaggagttcatcgcctactacggcgagcaccgc
cacgacgtggtccacgagatcgacggcgtcgtggtcaaggtcgaccaggtcgaccgccag
cgacgcctcggcgcgacgtcccgcgctccgcgctgggccatcgcctggaagtaccctccc
gaggaggtcaacacccggctgctggacatccgggtcaacgtgggccgcaccggccgggtc
accccctacggcgtcatggagccgatccgggtcgccggctcgaccgtcgagatggccacg
ctgcacaaccagcacgaggtgaagcgcaagggcgtgcggatcggcgacatggtcgtgctg
cgcaaggcgggcgacgtgatccccgagatcgtcgggccggtcgtggcgctgcgcgacggc
agcgagcgcgagttcgtcttcccgaccgagtgcccctcgtgcggcacaccgctggccccg
tcgcgtgagggcgacaaggacatccgctgccccaacacccgctcgtgcccgtcccagctg
cgcgagcggctcacgcacgtcggcggccggggcgcgttcgacatcgaggtcttcgggtgg
gagggcgccacggcgctgctggacgccggggtgctcaccgacgagggcggcctgttcgcg
ctgaccgccgagcagctgatgggcgtgccgctgtacacccgtgccgccaagaagaaggag
atcgaggccggctccggcgaccgcgtgctgagcgccaacggcatcgcgctgctgaagaat
ctgcagaccgccaagacccagccgctgtggcgggtgctggtggccctgtcgatccggcac
gtcggcccgactgccgcccgcgcgctcgcggcccacttcggcacgatggaggccatcgag
gaggtcctcacggtcgacgacccggtccagacgctgtcggccgtcgacggcgtggggccc
acgatcgccgaggcggtcgtcgactggttcagcgtcgactggcacgccgacatcgtccgg
cagtggcgtgacgcaggagtcgtcatggccgacgaacgggacgagtcgatcccgcgcacg
ctggagggcctgacgatcgtcgtgaccggctcgctcgagcggttcacccgcgactccgtc
aaggagacgatcatcgcccacggcggcaaggcgtccggctcggtgtcgaagaagaccgac
tacgtcgtggtgggcgacaacgccgggacgaaggccgacaaggcgcgcgatctgggccgg
ccgatcctcgacgaggagggcttcgagaggctgctggccgagggtccgcccactgctgac
gcgtga
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integrated database retrieval system
