Acetobacterium woodii: Awo_c02970
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Entry
Awo_c02970 CDS
T01732
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
awo
Acetobacterium woodii
Pathway
awo03030
DNA replication
awo03410
Base excision repair
awo03420
Nucleotide excision repair
awo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
awo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Awo_c02970 (ligA)
03410 Base excision repair
Awo_c02970 (ligA)
03420 Nucleotide excision repair
Awo_c02970 (ligA)
03430 Mismatch repair
Awo_c02970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
awo03032
]
Awo_c02970 (ligA)
03400 DNA repair and recombination proteins [BR:
awo03400
]
Awo_c02970 (ligA)
Enzymes [BR:
awo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Awo_c02970 (ligA)
DNA replication proteins [BR:
awo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Awo_c02970 (ligA)
DNA repair and recombination proteins [BR:
awo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Awo_c02970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Awo_c02970 (ligA)
MMR (mismatch excision repair)
DNA ligase
Awo_c02970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Awo_c02970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
RUBY_RBDX
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AFA47106
UniProt:
H6LGH0
LinkDB
All DBs
Position
345468..347459
Genome browser
AA seq
663 aa
AA seq
DB search
MSETQIEALRKKIDNYNRAYYQNDQPIVSDYEYDRCLQELIALETAHPELITPDSPTQRV
GGSPSESFNKVIYSRPKLSLSNAFEAGDLRDFDRRVRQTCPAASYVVEYKFDGLTVVLNY
EKGMFVQGATRGDGAVGENVTTNLKTIRTIPLRLEEPLTLEVRGEVFMAKADFEKLNQRR
LEQGESPFANPRNAAAGSLRQLDPKLTAARPLDIFVFNLESAGQPELKTHVETLDYLKKQ
GFKTSAVKTFDGIEAIIDYCQLMEIERKKLPFEIDGLVIKVNELSFREILGNTTKSPRWA
IAYKFTPDQAITTVDAITVQVGRTGALTPVAELTPVLLAGSVISRATLHNEDNIKEKDIR
IGDFVVIQKAGDVIPEVDHVVTEKRSGSEVIFQMPKKCPVCGEPTFRIEGEAVTKCLNMA
CPAQVFRKLVHFTSRDAMNIEGLGPGVLRLLMDQQLVIDPVDIYHLDAHKEKLVTLEKMG
EKSVENLLTGIEESKNRELSRLIFGLGIPLVGARGAKILAEHYRTMTKIMQAQVADLKEI
FEIGEKMATEIVDFFQTPTNIEIINGLAAAGLNMVQETQWDSQTLAGKTFVLTGTLPTLD
RREAKALIETNGGKVSSSVSKKTDYLLSGEKSGSKQTKAQELGIAIINEEQFLALVTSSE
FDL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaactcaaattgaagcattaagaaaaaaaattgataattataatcgtgcttat
tatcaaaatgatcagccgatcgtgtcggattatgaatatgatcgatgcctgcaggaactg
attgctctggaaacggcacatcccgaattaatcacacctgattcgccaacccaacgggtt
ggcggcagtccctccgagagttttaataaggtgatctatagccgccccaaacttagtttg
agcaatgcttttgaggcgggcgatctgcgtgattttgatcgccgggtgcggcaaacctgt
cccgcagcaagctatgtggtggaatataaatttgacggtttaacagtagtcttaaattat
gaaaaggggatgtttgttcagggggctacccgtggtgacggtgcggttggcgaaaatgta
acaacgaatctgaaaaccattcggaccattccattgcggcttgaagaaccgctaacgttg
gaggtgcggggagaagtttttatggcgaaagcagattttgaaaaactcaatcagcgccgt
ttggagcagggcgagagcccttttgccaacccccgaaatgcggccgccggttcgttaaga
caactggaccctaaacttacggccgcccggccactggatatttttgtatttaatttggaa
tcggcggggcaacccgaacttaaaacccacgttgaaacgctggactacttaaaaaagcag
ggctttaaaaccagtgctgttaaaacttttgatggcattgaagcaattattgattattgt
cagttgatggaaatagaaagaaaaaagctgccgtttgaaattgacgggttagtgattaag
gtaaatgaactgtcgtttcgcgaaatcttgggaaacacgactaaaagtccccgttgggca
attgcttataagtttacccccgatcaggccattaccaccgtcgatgccattacggttcaa
gttggtagaaccggagctttaacgccggtagccgaactgacgccggttttactggcagga
tcagtgattagtcgggcaacattgcataatgaagataatatcaaggaaaaagatattcgc
attggtgattttgtggtgatccagaaagctggcgatgtgattcccgaagttgatcatgtg
gtaacggaaaaacgaagcggtagtgaagtcatttttcaaatgccaaaaaaatgtccggtt
tgtggcgaaccaacctttcggattgaaggggaagcagtaactaaatgtttgaatatggcc
tgcccggctcaggttttccgaaaactggttcattttacttcccgcgatgcgatgaacatt
gaaggtttgggacccggtgtattgcgattattaatggatcaacaactggtgatcgatccg
gttgatatttatcatcttgatgcccacaaagaaaagttagttacgctcgagaagatgggt
gaaaaatcggttgagaatcttttgactgggattgaagaatcaaaaaaccgcgaattatca
cggcttatttttggcttgggcattcccctggtgggtgccagaggggcgaaaattttagcg
gaacattatcgcaccatgacaaaaattatgcaggcacaagtcgcagacctgaaagaaatt
tttgagattggggaaaaaatggcgaccgaaattgttgatttttttcagaccccgaccaat
attgaaatcatcaacggactggcggccgcgggcctgaatatggttcaggaaacgcaatgg
gattcccagacattggcaggaaaaacctttgtcctgaccggaactcttccgactttggat
cgacgagaagccaaagcgttaatcgaaaccaatggcggaaaagtatcgtccagtgtcagt
aaaaaaaccgattatctattgtcaggagaaaaatctggctctaaacaaacgaaagctcag
gaactgggaattgcaataattaacgaagaacagtttttagcccttgtcaccagtagtgaa
tttgatttataa
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integrated database retrieval system
