Amphibacillus xylanus: AXY_04480
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Entry
AXY_04480 CDS
T02266
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
axl
Amphibacillus xylanus
Pathway
axl03030
DNA replication
axl03410
Base excision repair
axl03420
Nucleotide excision repair
axl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
axl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXY_04480 (ligA)
03410 Base excision repair
AXY_04480 (ligA)
03420 Nucleotide excision repair
AXY_04480 (ligA)
03430 Mismatch repair
AXY_04480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
axl03032
]
AXY_04480 (ligA)
03400 DNA repair and recombination proteins [BR:
axl03400
]
AXY_04480 (ligA)
Enzymes [BR:
axl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXY_04480 (ligA)
DNA replication proteins [BR:
axl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXY_04480 (ligA)
DNA repair and recombination proteins [BR:
axl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXY_04480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXY_04480 (ligA)
MMR (mismatch excision repair)
DNA ligase
AXY_04480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXY_04480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
HNOB
NMDAR2_C
Motif
Other DBs
NCBI-ProteinID:
BAM46580
UniProt:
K0IVX2
LinkDB
All DBs
Position
461504..463501
Genome browser
AA seq
665 aa
AA seq
DB search
MSQIEKKINELRKQLQHYNHQYYVLDNPSVPDAEYDRLMNELIKLEEAHPELITPDSPTQ
RVGAKPLDVFEKVEHTTPMLSLANAFDVQDLRDFDRRIRESLSVDQVEYVAELKIDGLAV
SLRYQDGVFVQGATRGDGSVGEDITQNLRTVRSIPLAINETNPIEVRGEVFMPKQSFLKL
NEKRQEQELDLFANPRNAAAGSLRQLDPKIAAERNLDVFIYAVGEWQAGTSATHSEHLQY
LSELGFKTNPEWKKCDNIDEVIQYVESWIDRRNELAYDIDGIVIKVDRLEYQDILKTTAK
SPRWAIAYKFPAEEVVTKLIDVDFSVGRTGVVTPTAVLEPVRVAGTTVQRASLHNADYIE
EKDIRINDTVVIKKAGDIIPEVVRVIPEKRGQDSQPFQMPTHCPSCQSALERLDNEVALR
CVNLNCPAQLKEGLIHFVSRNAMNIEGLGEKIIEQLYQQKLVQKITDLYLLKEEELLKLE
RMGQKSVKNLLTAIEASKQNSLERLLFGFGIRFVGVTAARTLAMAFNDLDQLKEATYDQL
VTVDEIGDKMAESIVMFFTNEDVIEMIDQLKALGVNTRYLGAKPTDTAIDAIFSEKTVVL
TGKLEQLTRNEAKEKIEALGGKVTGSVSKKTDLLIAGADAGSKLTKAEQLGIEIWSEEQF
IEAIK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaatagagaaaaaaattaatgaattaagaaaacaacttcaacattataatcat
caatactatgtgttagacaatccttctgtacctgacgctgaatatgatcgattaatgaat
gaattaattaaacttgaagaggctcatcctgaactaattacgcctgattcaccgacacaa
cgagtaggtgctaaaccattagatgtttttgaaaaagttgagcataccaccccaatgctg
agcttagcgaatgcatttgatgttcaagacttacgtgattttgatcgacgaattcgtgag
tcattatcagttgatcaagttgaatatgtagctgaacttaaaatcgacggtttagccgtt
tcgcttcgttatcaagatggcgtattcgtccaaggagcgacacgtggtgatggctcagtc
ggtgaagatattacacaaaatttaagaaccgttcgtagtatcccactggcaattaatgaa
acaaatccaattgaagtacgtggagaagtgttcatgccaaaacaatcattcttaaaattg
aatgaaaaacgacaagagcaagaactagacttattcgccaatcctagaaacgctgcggcg
ggatcattacgtcaattagaccctaaaattgctgctgaacgaaatttagatgtttttatt
tacgcagtaggcgaatggcaagctggaacaagtgctacacatagtgaacatctacaatat
ttaagtgaactcggttttaaaacaaatccagaatggaaaaaatgtgacaacatagatgaa
gtcattcaatatgttgaatcatggattgatcgacgaaatgaattagcctatgatattgat
ggtattgtgattaaagttgatcgcttagagtatcaagatatattaaaaacaacagctaaa
agcccaagatgggcgattgcatataaatttccagcagaagaagttgtcacaaagctgatt
gatgttgactttagtgttggtagaaccggcgtagtgacaccaacggctgtactagagcct
gttcgagtagcaggaacaaccgttcaaagagcgtcacttcataatgctgactacattgaa
gaaaaggatattcgaataaatgataccgttgtgattaagaaagctggtgacatcattcct
gaagtcgtccgtgtcattcctgaaaaacggggtcaagactcacagccttttcagatgcca
acacattgtccgtcatgtcagtcagccttagaacgacttgacaatgaagtggcattacgt
tgtgtgaacttgaattgtccagcacaattgaaggaaggattaattcactttgtgtcccga
aatgcgatgaacattgaaggcctaggtgagaaaattattgagcaattgtatcaacaaaaa
ctcgttcagaaaatcactgatctatacttattaaaagaagaagagctacttaagcttgaa
cgaatgggtcaaaaatcagtaaaaaatttattaacagcaatagaagcatcgaaacaaaat
tcattagaacgccttctgttcggttttgggatccgatttgttggcgtaaccgcagcaaga
actctagcaatggcatttaatgatcttgatcaattaaaagaagcaacgtatgatcagctt
gtcacagttgatgaaattggtgacaaaatggctgaatcaattgttatgtttttcaccaat
gaagacgtgattgagatgatcgatcagttaaaagcacttggtgttaatacacgttattta
ggtgcaaaaccaaccgatacagctattgatgcgattttcagtgagaagacagttgtttta
acaggaaaacttgagcagcttacacgaaatgaagcaaaagaaaaaattgaagcacttggc
ggaaaagtaacaggaagcgtgagtaaaaagactgaccttttaattgcaggtgctgatgca
ggttcaaaattaacgaaagcagaacagctaggtattgaaatctggagtgaggaacaattt
atcgaggcgatcaaatag
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