Achromobacter xylosoxidans NH44784-1996: NH44784_005801
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Entry
NH44784_005801 CDS
T02785
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
axo
Achromobacter xylosoxidans NH44784-1996
Pathway
axo03030
DNA replication
axo03410
Base excision repair
axo03420
Nucleotide excision repair
axo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
axo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NH44784_005801
03410 Base excision repair
NH44784_005801
03420 Nucleotide excision repair
NH44784_005801
03430 Mismatch repair
NH44784_005801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
axo03032
]
NH44784_005801
03400 DNA repair and recombination proteins [BR:
axo03400
]
NH44784_005801
Enzymes [BR:
axo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NH44784_005801
DNA replication proteins [BR:
axo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NH44784_005801
DNA repair and recombination proteins [BR:
axo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NH44784_005801
NER (nucleotide excision repair)
GGR (global genome repair) factors
NH44784_005801
MMR (mismatch excision repair)
DNA ligase
NH44784_005801
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NH44784_005801
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
CCH04564
LinkDB
All DBs
Position
complement(597029..599128)
Genome browser
AA seq
699 aa
AA seq
DB search
MSKAGGTPAAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTP
ESPTQRVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAE
YFCELKLDGLAISLRYEDGRLVQAATRGDGQMGEDVTSNIRTIKAIPLQLSGPAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
RGLPGTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAF
YAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVG
AVLDKRPADAREFVMPKACPVCGSAIERLEDETIARCTGGLFCAAQRKQTLWHAASRKAL
DIEGLGEKLVEQLVDSGRVKSLADLFSLRPLELVGLDRMGQKSADNLVEAIDKARAPALG
RLLFALGIRHVGETTARDVARHFGSIEAIMDADEDALSSVPDVGPVVAGSIRRFFAEQHN
RDVIGQLKAQGVHAVAEAVPQDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVS
KKTAYLVAGEDAGSKLTKAQELGVTVLDEDGLKELLGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggccggagggacccccgcggcggaaaccgcggcgcgcctgcgcgcggaaatc
gagcagcacaacgtccgctattacgtctacgacgacccgtcgatctcggatgccgaatac
gaccgcttgatgcgcgagctgcaggacctggaagccgcgcatcccgaactggtcacgccc
gaatcacccacgcagcgggtcggcgcggcgccggtctcggccttcggcagcgtgcgccac
gcggtgccgatgctgtcgctgggcaacgccttcgacgaagaagacgtggtggcgttcgac
cgccgcgtcaccgatacgctgcgcggcgccggcctgctgggcccggcgcagcaggccgaa
tacttctgtgaactcaagctcgatggcctggcgatcagcctgcgctacgaggacggccgg
ctggtgcaggccgccacccgtggcgacggccagatgggcgaggacgtcacctccaatatc
cgcacgatcaaggcgatcccgctgcagctgagcggcccggcgcccaaggtgctggaggtg
cgcggcgaagtgctgatgaaccgcgccgatttcgagaaactcaacgcggcccaggccaag
cgcgacgagaaggtcttcgtcaacccgcgtaacgccgccgccggcagcctgcgccagctc
gacccgcgcatcaccgccaagcggccgttgcgctttttcgcctacggctggggtgaggtg
cggggcctgccgggcacgcagagcggcctgttcgacgaagcgtcggccggcgcggccgat
gcctcgaccctgcccgagaaatcgcatggcgccatgctcgactggctggcgtcgctgggc
ctgccggtcaatgtgaagcacaaccaccgcgccaccggcgccgagggcctgatggcgttc
tacgccaaggtcggcgccctgcggcccgaactgccctacgacatcgacggcgtggtctac
aaggtggattcgctgccggcgcagaaactgctgggcttcgtggcgcgcgcgccccgcttt
gcgctggcgcacaaattcccggccgaggaagccaccaccacgctgctggacatcgaggtg
caggtcggccgtaccggcgccatcaccccggtcgcccggctcaagccggtgttcgtgggc
ggcgtgaccgtcaccaacgccacgctgcacaacgaagacgagatccgccgcaaggacgtg
cgcatcggtgacaccgtcatcgtgcgtcgcgccggcgacgtgattccggaggtggtgggc
gcagtgctcgataagcgtcccgccgacgcgcgcgagttcgtcatgcccaaggcctgccct
gtctgtggctcggcgatcgagcgcctggaagacgaaaccatcgcccgctgcaccggcggg
ctgttctgtgccgcgcagcgcaaacagacgctgtggcacgcggccagccgcaaggcgctc
gatatcgagggcctgggcgagaagctggtggagcaattggtggacagcggccgcgtcaaa
tcgctggccgacctgttcagtctgcgcccgctcgaactggtcgggctggaccgcatgggc
caaaaatcggccgacaacctggtcgaggccatcgacaaggcgcgcgcgccggcgttggga
cgcctgttgttcgcgctgggcatccgccacgtgggcgagaccacggcgcgcgacgtggcc
cggcactttggcagcatcgaggccatcatggacgccgacgaggacgcgctgtcctccgtg
ccggacgtggggccggtggtggcagggtcgatccgccgcttcttcgccgaacagcacaat
cgcgacgtgatcgggcagctcaaggcccagggcgtgcatgcggtggccgaggcggtgccg
caggacaccacgctggcgggcaagaccttcgtgctgaccggcacgctgcccaactggacg
cgcgaggaagcctccatgcgcatccaggccgcgggcggcaaggtcagcggctcggtgtcc
aagaagaccgcctatctcgtggccggcgaagacgccggcagcaagctcaccaaggcccag
gaactgggcgtcacggtgctggacgaggacgggctcaaggaattgctgggttcctcctga
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