Achromobacter xylosoxidans A8: AXYL_01488
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Entry
AXYL_01488 CDS
T01341
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
axy
Achromobacter xylosoxidans A8
Pathway
axy03030
DNA replication
axy03410
Base excision repair
axy03420
Nucleotide excision repair
axy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
axy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXYL_01488 (ligA)
03410 Base excision repair
AXYL_01488 (ligA)
03420 Nucleotide excision repair
AXYL_01488 (ligA)
03430 Mismatch repair
AXYL_01488 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
axy03032
]
AXYL_01488 (ligA)
03400 DNA repair and recombination proteins [BR:
axy03400
]
AXYL_01488 (ligA)
Enzymes [BR:
axy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXYL_01488 (ligA)
DNA replication proteins [BR:
axy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXYL_01488 (ligA)
DNA repair and recombination proteins [BR:
axy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXYL_01488 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXYL_01488 (ligA)
MMR (mismatch excision repair)
DNA ligase
AXYL_01488 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXYL_01488 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADP14826
UniProt:
E3HS34
LinkDB
All DBs
Position
1579626..1581734
Genome browser
AA seq
702 aa
AA seq
DB search
MNSTSGGESAAQAAARLRAEIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELVT
PESPTQRVGAAPVSAFGSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQA
DYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFPKVLE
VRGEVLMNRADFEKLNQAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGE
VQGLAGTQGGLFAEASAGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMA
FYAKVGKLRPELPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVL
GPVLEKRPDDAREFVMPTACPICGSAIERLEDETIARCTGGLFCGAQRKQTLWHAASRKA
LDIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPAL
NRLLYALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQH
NRDVIEQLKAQGVNPVAEAAPQATTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSV
SKKTAYLVAGEDSGSKLAKAQELGVTVLDEDGLKTLLGEQGG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcacgtctggcggtgaaagcgcggcgcaggccgcggcgcgcttgcgcgccgaa
atcgaacagcacaacgttcgctattacgtctacgacgaaccgtcgatctcggatgccgag
tacgacggactgatgcgcgaactgcaggccctggaggccgagcatccggaactggtgacg
ccggagtcgcccacgcagcgcgtgggcgcggcgcccgtctccgcctttggcagcgtgcgc
cacgtggtgccgatgctgtcgctgggcaacgccttcgacgaagaggacgtggcggctttc
gaccgccgcgtcaccgacacgctgcgcggcgcgggcctgctgggtccggcgcagcaagcc
gattacttctgcgaactcaagctggacgggctggcgatcagcctgcgctacgaggatggc
cgcctggtgcaggccgccacccgcggcgacggccagaccggcgaggatgtcacctcgaat
atccgcaccatcaaggcgatcccgctgcagctcaaggggaccttccccaaggtgctggaa
gtccgcggcgaagtcctgatgaaccgcgccgacttcgaaaaactgaaccaggcccaggcc
aagcgcgacgaaaaagtcttcgtcaatccgcgcaatgccgccgcgggcagcctgcgccag
ctggatccgcgcatcaccgccaagcggccgctgcgtttctttgcctatggctggggtgag
gtgcagggcttggcgggcacgcaaggcggcctgttcgccgaagcgtcggcgggcgcggcc
gaggcctcgcagttgcccgagaaatcccatggcgccatgctggattggctggcctcgctg
ggcctgccggtcaacgtcaagcacaaccaccgcgccagcggcgccgagggcctgatggcc
ttctacgcaaaggtcggcaagctgcggcccgagttgccctacgacatcgacggcgtggtc
tacaaggtggactcgctgccggcgcaaaaggtgctgggcttcgtggcgcgtgcgccgcgc
tttgcgctggcgcacaagttcgccgcggaagaggccaccaccaccttgctcgatatcgag
gtgcaggtgggccgcaccggcgccatcacgccggtcgcgcgcctgaagccggtgttcgtg
ggcggggtcaccgtcaccaacgctacgctgcacaacgaagacgagatccgccgcaaggac
gtgcgcatcggcgatacggtcatcgtgcgccgcgcgggcgacgtgattcccgaagtgttg
ggcccggtgctggaaaagcggccagacgacgcgcgcgaattcgtcatgcccacggcctgt
ccgatttgcggctccgccatcgaacgcctggaagacgagaccatcgcgcgctgcaccggc
ggcctgttctgcggcgcgcagcgcaagcagacgctctggcatgccgccagccgcaaggcg
ctggatatcgaaggcctgggcgagaagctggtggaccagctggtcgacagcggccgggtc
aagaccctggctgacctgtacagcctgcgcccgctggagttggtggggctggaccgcatg
ggccagaagtccgccgacaatctggtggccgccatcgacaaggcgcgcgcgccggccttg
aaccgcctgctgtacgcgctgggcatccgccacgtgggcgagaccacggcgcgcgacgtg
gcgcgccatttcggcagcatcgacgccatcatggacgccgatgaggacgccttgtcctcc
gtgcccgatgtgggtccggtggtggcggcctcgatccgccgcttcttcgccgagcagcac
aaccgcgacgtgatcgaacagctcaaggcgcagggcgtgaatcccgtggccgaggcggcg
ccgcaagcgaccaccctggccggcaagaccttcgtgctgaccggcaccctgcccaactgg
acgcgcgaagaagcctcgatgcgcatccaggccgccggcggcaaggtcagcggttcggtg
tccaagaagacggcctatctggtggccggcgaagattccggcagcaagctcgccaaggcg
caagaattgggcgtgacggtgctggatgaagacggactgaaaaccttgctgggcgagcag
ggcggctga
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integrated database retrieval system
