Azoarcus sp. KH32C: AZKH_2800
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Entry
AZKH_2800 CDS
T02502
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aza
Azoarcus sp. KH32C
Pathway
aza03030
DNA replication
aza03410
Base excision repair
aza03420
Nucleotide excision repair
aza03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AZKH_2800 (lig)
03410 Base excision repair
AZKH_2800 (lig)
03420 Nucleotide excision repair
AZKH_2800 (lig)
03430 Mismatch repair
AZKH_2800 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aza03032
]
AZKH_2800 (lig)
03400 DNA repair and recombination proteins [BR:
aza03400
]
AZKH_2800 (lig)
Enzymes [BR:
aza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AZKH_2800 (lig)
DNA replication proteins [BR:
aza03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AZKH_2800 (lig)
DNA repair and recombination proteins [BR:
aza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AZKH_2800 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AZKH_2800 (lig)
MMR (mismatch excision repair)
DNA ligase
AZKH_2800 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AZKH_2800 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
DUF4796_N
UVR
Motif
Other DBs
NCBI-ProteinID:
BAL25106
LinkDB
All DBs
Position
complement(3164112..3166145)
Genome browser
AA seq
677 aa
AA seq
DB search
MFASSEAFERAAQLRRELEAHNYAYYVLDAPTVPDAEYDRLFRELEALEAKYPELATPDS
PTRRVGGAPMPELRPVRHKVPMLSIRTETDTSNGGIVAFDTRVRNALGLGETDPAVEYAG
ELKFDGLAISLRYEDGVLVSGATRGDGETGEDVTHNVRTIRQIPLRLKGDAPAVIEVRGE
IYMRRDEFDKLNARQLAAGEKVFVNPRNAAAGAVRQLDPRIAAKRPLSFFAYGLGEVGDW
KMPGTHAGLLDALAAFGFPVCELRVLAQGVEGLKAFHDRIAALRDSLPYDIDGVVYKVNR
FDLQRELGFVTREPRWAVAHKYPAQEEITELLGIEVQVGRTGALTPVARLKPVFVGGVTV
TNATLHNEEEIQRKGILIGDHVIVRRAGDVIPQVVAAIVERRTGMERAFVMPTSCPVCGS
HVDKAEDEAVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVEAGIVKTPAD
LYKLGVLALANLQRMAEKSAANLLAAIEKSRHTTLARFIFALGIRNVGEATAKDLARHFG
SLDRVMDASVEQLLEVPDVGPIVAESIAAFFAEAHNREVIEQLRAAGVTWEEGAPAARVA
GGLSGKVFVLTGTLPTMSREDAKALIEARGGKVSGSVSKKTDYVVAGAEAGSKLAKAQEL
GVAILDEAGLLQLIEAE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcttcgtctgaagcgttcgagcgcgccgcacagttgcggcgcgagctcgaagcg
cacaactacgcctattatgttctcgatgcgccgaccgttccggacgccgaatatgaccgg
ctgttccgtgagctggaggccctcgaagccaagtatccggagcttgcgacccccgattcg
ccgacccgtcgcgtcggcggagcgccgatgcccgagctcaggccggtccgccacaaggtg
ccgatgctgtcgatccgcaccgagaccgacaccagcaatggcggcatcgtcgcgttcgac
acgcgcgtgcgtaacgcactcgggctgggcgagaccgatccggccgtggagtacgccggc
gagctgaagttcgacgggctggcgatcagtctgcgctacgaggatggggtcctggtcagc
ggcgcgacgcgcggcgacggggagaccggcgaggacgtgacgcacaacgtgcgcacgatc
cggcagattccgctccgtctcaaaggcgatgcgccggccgtgatcgaggtgcggggcgag
atttacatgcggcgcgacgagttcgacaagctgaatgcgcgtcagctcgcggcgggcgag
aaggtcttcgtcaatccgcgcaacgccgcggccggcgccgtgcgtcagctcgatccgcga
atcgctgcaaagcggcccttgtcctttttcgcgtacggcctgggcgaagtcggcgactgg
aagatgccagggacgcacgccggcttgctggatgcgctcgcggcattcggtttcccggtg
tgcgagctccgcgtcctcgcccagggcgtcgaaggactcaaggcatttcacgatcgcatc
gccgcattgcgcgacagcctgccttacgacatcgatggcgtcgtctacaaggtcaatcgt
ttcgatctgcagcgcgagctcggttttgtcacgcgcgagccgcgttgggccgttgcgcac
aagtatccggctcaggaagaaatcactgagctactcggcatcgaagtgcaggttgggcga
actggtgcgctgacgccggtcgcacggttgaagccggtcttcgtcggcggcgtcaccgtg
accaacgcgacgctgcacaacgaggaggaaatccagcgcaaggggatcctgatcggtgac
catgtcatcgtgcggcgggccggagacgttataccgcaggtcgtcgctgcgattgtcgag
cggcggacgggaatggagcgggccttcgtgatgccgacgagctgtccggtgtgcggatcc
cacgtcgacaaggcggaggacgaggcggtggcgcgctgcacgggggggcttttctgcccg
gcgcagcgcaagcaggcgctgctgcactttgccgggcgacgcgcgatggacatcgagggg
ctgggcgacaagctggtcgatcagctggtcgaggcgggcatcgtcaagacgccggcggac
ctctacaagctgggcgtgctggcgctggcgaacctgcagcggatggccgagaagtcggcg
gcgaacctccttgcggcgatcgagaagagccggcatacgacactcgcgcgcttcatcttc
gcgctcggcatccgcaatgtcggcgaggcgacggcgaaggatttggcgcggcatttcggt
tcgctcgatcgggtgatggacgcaagcgtcgagcagttgctggaagtgccggacgtgggg
ccgatcgtcgcagagagcatcgcggcgttctttgccgaggcgcacaaccgcgaagtcatc
gagcagttgcgggcggcgggcgtgacgtgggaagaaggcgccccggcggcgcgagtggcg
ggagggctcagcggcaaggtgttcgtgctgactggaacgctgccgacgatgagccgcgag
gacgcgaaagccctgatcgaggcgcggggcggcaaggtgagcggttcggtgtcgaagaag
acggattatgtagtcgcaggtgcggaagccgggtcgaaactggccaaggcgcaggaactg
ggtgtggcgatcctggatgaagcagggttgctgcaactcattgaagcagaatga
DBGET
integrated database retrieval system
