KEGG   PATHWAY: azd02010
Entry
azd02010                    Pathway                                
Name
ABC transporters - Azoarcus sp. DN11
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
azd02010  ABC transporters
azd02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Azoarcus sp. DN11 [GN:azd]
Gene
CDA09_00405  [KO:K10001]
CDA09_00410  [KO:K10003]
CDA09_00415  [KO:K10002]
CDA09_00420  [KO:K10004] [EC:7.4.2.1]
CDA09_00750  [KO:K01996]
CDA09_00755  [KO:K01995]
CDA09_00760  [KO:K01998]
CDA09_00765  [KO:K01997]
CDA09_00770  [KO:K01999]
CDA09_00865  [KO:K11073]
CDA09_00870  [KO:K11076] [EC:7.6.2.16]
CDA09_00875  [KO:K11075]
CDA09_00880  [KO:K11074]
CDA09_01290  [KO:K02193] [EC:7.6.2.5]
CDA09_01295  ccmB; heme exporter protein CcmB [KO:K02194]
CDA09_01300  [KO:K02195]
CDA09_01305  ccmD; heme exporter protein CcmD [KO:K02196]
CDA09_01380  ccmD; heme exporter protein CcmD [KO:K02196]
CDA09_01385  [KO:K02195]
CDA09_01725  [KO:K01999]
CDA09_01730  [KO:K01997]
CDA09_01735  [KO:K01995 K01998]
CDA09_01740  [KO:K01996]
CDA09_01855  [KO:K01999]
CDA09_01980  [KO:K09694]
CDA09_01985  [KO:K09695]
CDA09_02065  [KO:K05772]
CDA09_02075  [KO:K02036] [EC:7.3.2.1]
CDA09_02080  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CDA09_02085  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CDA09_02090  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
CDA09_02585  msbA; lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
CDA09_04090  [KO:K09812]
CDA09_04095  [KO:K09811]
CDA09_04230  [KO:K02065]
CDA09_04235  [KO:K02066]
CDA09_04240  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
CDA09_04250  [KO:K07323]
CDA09_04255  [KO:K07122]
CDA09_04535  [KO:K15576]
CDA09_04540  ntrB; nitrate ABC transporter, permease protein [KO:K15577]
CDA09_04545  [KO:K15578] [EC:7.3.2.4]
CDA09_05770  [KO:K02045] [EC:7.3.2.3]
CDA09_05775  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CDA09_05780  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CDA09_05850  [KO:K15555] [EC:7.6.2.14]
CDA09_05855  [KO:K15554]
CDA09_05860  [KO:K15554]
CDA09_05865  [KO:K15553]
CDA09_05925  [KO:K23163]
CDA09_06030  [KO:K02066]
CDA09_06035  [KO:K02065]
CDA09_06040  [KO:K02067]
CDA09_06575  [KO:K10001]
CDA09_06585  [KO:K10003]
CDA09_06590  [KO:K10002]
CDA09_06595  artP; arginine transporter ATP-binding subunit [KO:K10004] [EC:7.4.2.1]
CDA09_06915  [KO:K01999]
CDA09_07215  [KO:K19341]
CDA09_07220  [KO:K19340]
CDA09_07865  [KO:K10022]
CDA09_07870  [KO:K10024]
CDA09_07875  [KO:K10023]
CDA09_07880  [KO:K10025] [EC:7.4.2.1]
CDA09_08035  [KO:K05773]
CDA09_08040  [KO:K06857] [EC:7.3.2.6]
CDA09_08160  lptF; LPS export ABC transporter permease LptF [KO:K07091]
CDA09_08165  lptG; LPS export ABC transporter permease LptG [KO:K11720]
CDA09_08490  [KO:K01999]
CDA09_08495  [KO:K01997]
CDA09_08500  [KO:K01998]
CDA09_08505  [KO:K01995]
CDA09_08510  [KO:K01996]
CDA09_08560  [KO:K11069]
CDA09_08565  [KO:K11071]
CDA09_08570  [KO:K11070]
CDA09_08575  [KO:K11072] [EC:7.6.2.11]
CDA09_10170  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
CDA09_10175  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CDA09_10180  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CDA09_10185  [KO:K02036] [EC:7.3.2.1]
CDA09_10565  [KO:K01999]
CDA09_10575  [KO:K01997]
CDA09_10580  [KO:K01998]
CDA09_10585  livG; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG [KO:K01995]
CDA09_10590  [KO:K01996]
CDA09_10775  [KO:K02040]
CDA09_10780  [KO:K02037]
CDA09_10785  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CDA09_10790  [KO:K02036] [EC:7.3.2.1]
CDA09_10925  [KO:K02002]
CDA09_10930  [KO:K02000] [EC:7.6.2.9]
CDA09_10935  [KO:K02001]
CDA09_11045  [KO:K02000] [EC:7.6.2.9]
CDA09_11050  [KO:K02001]
CDA09_11055  [KO:K02002]
CDA09_11270  [KO:K02071]
CDA09_11275  [KO:K02072]
CDA09_11280  [KO:K02073]
CDA09_11635  [KO:K10112] [EC:7.5.2.-]
CDA09_12065  [KO:K01996]
CDA09_12070  [KO:K01995]
CDA09_12075  [KO:K01998]
CDA09_12080  [KO:K01997]
CDA09_12085  [KO:K01999]
CDA09_12235  [KO:K01999]
CDA09_12240  [KO:K01997]
CDA09_12245  [KO:K01998]
CDA09_12250  [KO:K01995]
CDA09_12255  [KO:K01996]
CDA09_12555  lolD; lipoprotein-releasing system ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
CDA09_12560  [KO:K09808]
CDA09_12785  [KO:K02067]
CDA09_12790  [KO:K02065]
CDA09_12795  [KO:K02066]
CDA09_12890  [KO:K02045] [EC:7.3.2.3]
CDA09_12895  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CDA09_12900  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CDA09_12905  [KO:K02048]
CDA09_13255  [KO:K02012]
CDA09_13270  [KO:K02011]
CDA09_13275  [KO:K02010] [EC:7.2.2.7]
CDA09_14730  [KO:K01999]
CDA09_14735  [KO:K01996]
CDA09_14740  [KO:K01995 K01998]
CDA09_14745  [KO:K01997]
CDA09_16250  pstB; phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
CDA09_16260  [KO:K02040]
CDA09_17890  [KO:K01999]
CDA09_17895  [KO:K01997]
CDA09_17900  [KO:K01998]
CDA09_17905  [KO:K01995]
CDA09_17910  [KO:K01996]
CDA09_18450  [KO:K09691] [EC:7.5.2.14]
CDA09_18850  [KO:K12541]
CDA09_18970  [KO:K05685] [EC:7.6.2.-]
CDA09_19695  [KO:K15553]
CDA09_19700  [KO:K15554]
CDA09_19705  [KO:K15555] [EC:7.6.2.14]
CDA09_19715  [KO:K01996]
CDA09_19720  [KO:K01999]
CDA09_19725  [KO:K01998]
CDA09_19730  [KO:K01997]
CDA09_19735  [KO:K01995]
CDA09_20235  [KO:K02067]
CDA09_20560  [KO:K02471]
CDA09_20580  [KO:K24821]
CDA09_20790  [KO:K01995]
CDA09_20795  [KO:K01996]
CDA09_20800  [KO:K01999]
CDA09_20805  [KO:K01997]
CDA09_20810  [KO:K01998]
CDA09_20840  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
CDA09_21180  [KO:K01999]
CDA09_21185  [KO:K01999]
CDA09_21190  [KO:K01997]
CDA09_21195  [KO:K01998]
CDA09_21200  [KO:K01995]
CDA09_21205  [KO:K01996]
CDA09_21835  [KO:K01999]
CDA09_21840  [KO:K01997]
CDA09_21845  [KO:K01998]
CDA09_21850  [KO:K01995]
CDA09_21855  [KO:K01996]
CDA09_22245  [KO:K01999]
CDA09_22250  [KO:K01998]
CDA09_22255  [KO:K01997]
CDA09_22275  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
CDA09_22280  modB; molybdenum ABC transporter permease subunit [KO:K02018]
CDA09_22285  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
CDA09_22690  [KO:K01996]
CDA09_22695  [KO:K01995]
CDA09_22700  [KO:K01998]
CDA09_22705  [KO:K01997]
CDA09_22710  [KO:K01999]
CDA09_22965  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
CDA09_22970  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
CDA09_22980  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
CDA09_22985  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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