Azoarcus sp. DN11: CDA09_14895
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Entry
CDA09_14895 CDS
T05691
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03030
DNA replication
azd03410
Base excision repair
azd03420
Nucleotide excision repair
azd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDA09_14895
03410 Base excision repair
CDA09_14895
03420 Nucleotide excision repair
CDA09_14895
03430 Mismatch repair
CDA09_14895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azd03032
]
CDA09_14895
03400 DNA repair and recombination proteins [BR:
azd03400
]
CDA09_14895
Enzymes [BR:
azd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CDA09_14895
DNA replication proteins [BR:
azd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDA09_14895
DNA repair and recombination proteins [BR:
azd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CDA09_14895
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDA09_14895
MMR (mismatch excision repair)
DNA ligase
CDA09_14895
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDA09_14895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
UVR
Motif
Other DBs
NCBI-ProteinID:
AYH44659
LinkDB
All DBs
Position
complement(3246835..3248868)
Genome browser
AA seq
677 aa
AA seq
DB search
MIASALEFERAARLRRELEAHNHAYYVLDAPTVPDAEYDRLFRELEALERDYPELATPDS
PTQRVGGAPMPELAAVRHAVPMLSIRTETDTTNGGVIAFDTRVRNALGLGPADAPVEYLG
ELKFDGLAISLRYEHGVLVRAATRGDGETGEDVTHNVRTIRQIPLRLSGKPPALLEVRGE
IYMRRDDFQRLNARQEQAGEKLFINPRNTAAGAVRQLDPRIAAKRPLSFFAYGLGETGDW
ALPPTQAALLDAFAAFGLPVCEHRVVAVGVDGLCEFHDRIAALRDSLPYDIDGVVYKVNR
FDLQRELGFVTREPRWAVAHKYPAQEEITELLDIEVQVGRTGALTPVARLKPVFVGGVTV
TNATLHNEEEILRKGVLIGDQVIVRRAGDVIPEVVGPIVERRKGGERAFVMPTRCPVCAS
HVEKAEDEVVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVEAGIVKTPAD
LYRLGVLALANLPRMAEKSAANLLAAIEKSRHTTLARFIFALGIRNVGEATAKDLARHFG
ALDALMEATSERLVEVPDVGPVVAQSIARFFAEAHNREVIEQLRAAGVTWEEGAPAAPVA
GSASGKVFVLTGTLPTLSRDEAKALIEAHGGKVSGSVSKKTDYVVAGEEAGSKLAKAEEL
GVAILDQDGLLRLLEQG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcttcggccctggaattcgagcgcgccgcccggttgcggcgcgagctcgaagcg
cacaatcacgcctattacgttctcgacgcgccgacggtcccggacgccgaatacgaccgg
ctgttccgcgagctggaggcgctggagcgcgactaccccgagctggcgacacccgattcg
ccgacgcagcgggtcggcggtgcgccgatgcccgaactggcggcggtgcggcacgcggtg
ccgatgctgtcgatccgcaccgagaccgacaccacgaacggtggcgtgatcgcatttgac
acgcgcgtgcgcaacgcgctgggactgggccccgcggatgcgcccgtggagtatctcggc
gaactgaagttcgacggcctggccatcagcctgcgctacgagcacggcgtgctggtgcgt
gcggcgacgcgcggcgacggcgagaccggcgaggacgtgacgcacaacgtgcgcacgatc
cgccagattccgctgcgcctgtcgggcaagccgcccgcgctgctggaagtgcgcggtgag
atctacatgcgccgcgacgatttccagcgcctgaatgcgcgccaggagcaggccggggag
aagctcttcatcaacccgcgcaatacggcggcgggcgcggtgcgccagctcgacccgcgc
atcgccgcgaagcgcccgctgtcctttttcgcctacggactgggcgaaaccggcgactgg
gcgctgccgccgacgcaggcggcgctgctcgacgcgtttgcggccttcggcctgccggtg
tgcgagcaccgggtcgtcgcggtcggcgtcgacgggctgtgtgaattccacgaccgcatc
gcggcgctgcgcgacagcctgccgtacgacatcgacggggtcgtgtacaaggtcaaccgc
ttcgatctgcagcgcgaactcggcttcgtgacgcgcgaaccgcgttgggcggtcgcgcac
aagtacccggcgcaggaagagatcaccgaactcctcgacatcgaggtgcaggtcggccgc
accggtgcgctgacgccggtcgcacgcctgaagccggtgttcgtcggcggcgtcacggtg
accaacgcgaccctgcacaacgaagaggaaatcctgcgcaagggcgtgctgatcggcgat
caggtcatcgtacggcgggccggcgacgttatacctgaggtcgtcggtccgatcgtcgaa
cggcgcaagggcggcgagcgggccttcgtgatgccgacccgttgcccggtgtgcgcgtcg
cacgtcgagaaggccgaggacgaagtggtggcgcgctgcacgggcgggctgttctgtccc
gcgcagcgcaagcaggccctgctgcatttcgccgggcggcgcgcgatggacatcgagggt
ctgggcgacaagctggtcgaccagctcgtcgaggccggcatcgtgaagacgccggcggac
ctctacaggctgggcgtgctggcgttggcgaacctgccgcgcatggccgagaagtcggcg
gccaacctgctcgcggcgatcgagaagagccggcatacgacgctcgcgcgcttcatcttc
gcgctcggcatccgcaatgtcggcgaagcgacggcgaaggatctggcgcggcatttcggc
gcgctcgacgcgctgatggaggcgacgtccgagcggctggtggaagtgccggatgtcggc
ccggtggtggcgcagagcatcgcgcgcttcttcgccgaggcgcacaaccgcgaggtgatc
gagcaattgcgcgcggcgggcgtgacatgggaagaaggcgcgccggcagcgccggtggcg
ggcagcgccagcggcaaggtcttcgtgctgaccggcacgctgccgacgctgagccgcgac
gaggcgaaggcgctgatcgaggcgcacggcggcaaggtcagcgggtcggtgtcgaagaag
acggattacgtggttgcgggcgaggaagccggttccaagctcgcgaaggcggaagaactg
ggcgtggcgatcctcgatcaggacggcttgctgcgcctgctcgaacaaggttga
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integrated database retrieval system
