Azoarcus olearius BH72: azo2001
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Entry
azo2001 CDS
T00441
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
azo
Azoarcus olearius BH72
Pathway
azo03030
DNA replication
azo03410
Base excision repair
azo03420
Nucleotide excision repair
azo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
azo2001
03410 Base excision repair
azo2001
03420 Nucleotide excision repair
azo2001
03430 Mismatch repair
azo2001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azo03032
]
azo2001
03400 DNA repair and recombination proteins [BR:
azo03400
]
azo2001
Enzymes [BR:
azo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
azo2001
DNA replication proteins [BR:
azo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
azo2001
DNA repair and recombination proteins [BR:
azo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
azo2001
NER (nucleotide excision repair)
GGR (global genome repair) factors
azo2001
MMR (mismatch excision repair)
DNA ligase
azo2001
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
azo2001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CAL94618
UniProt:
A1K713
LinkDB
All DBs
Position
complement(2203255..2205336)
Genome browser
AA seq
693 aa
AA seq
DB search
MPLFADAAARAATLRAEIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELLTPDS
PTQRVGGAPLPELVPVRHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLS
ELKFDGLAISLRYEHGVLVRAATRGDGETGEDVTHNVRTIQQIPLRLHGAAPAVIEVRGE
IYMRRDDFEALNNRQREAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGF
DLPATQAELLTRLAAFGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNR
VDLQRELGFVTREPRWAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTV
TNATLHNQDEIDRKDVRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPTCPV
CGSHVVRGEDEAVARCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVDASIVKT
PADLYKLGILALANLERMGEKSAQNLLAAIEKSRNTTLARFIFALGIRNVGEATAKDLAR
HFGSLDALLAADEGALQQVPDVGPVVAKCIAEFFAEAHNVEVVEQLRAAGLRWEEGAPAA
PASGSVAGLTFVITGTLPTLSRDEAKALIEAHGGKVSGSVSKKTDYLVAGAEAGSKLAKA
QDLGVDIVDEDGLRRLLESGEQSPINNKDGVPE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgtttgccgatgctgccgcgcgggcggcgaccctgcgggcggaaatcgcccgc
cataaccacgcctactacgtcctcgacacgccgacgattccggacgccgagtacgaccgc
ctgttccgcgaactgcaggatatcgaggcggcgcaccccgagttgctcacgcccgattcg
cccacccagcgggtcggcggcgcgccgcttcctgaactggtgccggtgcgccatgcggtg
ccgatgttgtccatccgcacggagaccgacaccactgcgcaaggcgtccgcaacttcgac
acccgggtgcgaaacgcgctcggcttgggcgatggcgaccctgcagtggaatacctgagc
gaactcaagttcgacggtctcgccatcagcctgcgttacgaacacggcgtgctggttcgg
gcagccacgcgcggcgatggcgaaaccggcgaggacgtcacccacaacgtgcgcacgatc
cagcagattccgctacgcctgcacggggcggcccctgcggtcatcgaggtccgcggcgag
atctacatgcggcgcgacgacttcgaagcactcaacaaccgccagcgcgaagcgggcgac
aaggtcttcgtcaacccgcgcaacgccgcggccggcgccgtacgccagcttgatccgcgc
atcgccgcgcgccgtcccttgtccttcttcgcctacgggctgggggagcatgccggattc
gatctgcccgctacgcaggcggaactattgacccgcctcgccgcgtttggcgtgccggta
tgcgaacaccgggaggtctcctcgggcccggagggcctgattgccttccacgaccgcatc
gccgcgttgcgcaacgaactgccctacgacatcgacggcgtggtctacaaggtgaaccgc
gtcgacctgcagcgcgaactcggtttcgtcacccgcgagccgcgctgggcggtggcgcac
aagtacccggcgcaggaagagatcacgcgcctcgccggcatcgacgtgcaggttggccgc
accggcgcactcacgccggtggcaaggctggagccggtcttcgtcggcggcgtcacggtt
accaacgcaacgctgcacaaccaggacgagatcgaccgcaaggacgtgcgcgtcggcgac
tgggtgatcgtgcgccgcgcgggcgacgtgattcccgaagttgtcggcccggtgctggag
cgccgcgtaggcgaaccgccgcgcttcaacctgctggcgagctatccgacctgcccggtg
tgcggctcgcacgtggtgcgcggcgaggacgaggcggtggcgcgctgcagcggcggcctg
ttctgcccggcgcagcgcaagcaggcgctgttgcatttcgcgggccgccgcgcgatggac
atcgaaggactcggcgacaaactggtcgagcaactcgtcgatgccagcatcgtgaagacg
ccggccgacctctacaagctcggcatcctcgcgctcgccaatctggagcgcatgggtgag
aagtccgcgcagaacctgttggcggccatcgagaagagccgcaataccacgctcgcccgc
ttcatcttcgcgctcggcatccgcaacgtcggcgaagccaccgcgaaggatctcgcccgc
catttcggcagcctcgatgcattgctggcggcggacgagggcgcgctgcaacaagtgccg
gacgtcggcccggtggtcgcaaagtgcattgccgagtttttcgccgaggcccacaacgtc
gaggtggtcgagcaactgcgcgcggccggcctgcgttgggaggagggcgcgcctgcggcg
ccggccagcggcagcgtcgcaggcctgaccttcgtaatcaccggcacgctgccgacactg
tcgcgcgacgaggccaaggcgctgatcgaggcccacggcggcaaggtcagtggttcggtt
tccaagaagacggattacctggtggcgggggccgaagccggttccaagctcgccaaggcg
caggatctcggggtggacatcgtcgatgaggacggtctgcgccgattgctggaatcgggc
gaacagtcgcccatcaacaacaaggacggagtcccagaatga
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