Nitrogeniibacter mangrovi: G3580_10515
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Entry
G3580_10515 CDS
T06549
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
azq
Nitrogeniibacter mangrovi
Pathway
azq03030
DNA replication
azq03410
Base excision repair
azq03420
Nucleotide excision repair
azq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3580_10515 (ligA)
03410 Base excision repair
G3580_10515 (ligA)
03420 Nucleotide excision repair
G3580_10515 (ligA)
03430 Mismatch repair
G3580_10515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azq03032
]
G3580_10515 (ligA)
03400 DNA repair and recombination proteins [BR:
azq03400
]
G3580_10515 (ligA)
Enzymes [BR:
azq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3580_10515 (ligA)
DNA replication proteins [BR:
azq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3580_10515 (ligA)
DNA repair and recombination proteins [BR:
azq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3580_10515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3580_10515 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3580_10515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3580_10515 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
DUF8453
Motif
Other DBs
NCBI-ProteinID:
QID18039
UniProt:
A0A6C1B4W4
LinkDB
All DBs
Position
complement(2290264..2292339)
Genome browser
AA seq
691 aa
AA seq
DB search
MSAPQEKAQRAQALRETLDRYNREYYVLDTPSVPDAEYDRLFAELQALEQAYPALATPDS
PTRRVGGAPLPELTPVTHRVPMLSINTETDKSAQGALAFDARVRRALGLETDAPAVEYAA
ELKFDGLAINLRYEDGVLVQAATRGDGQTGEDVTHNVRTIGQIPLRLSGEAPPVIEVRGE
IYMRRDAFEALNARQREAGLKTFVNPRNTAAGAIRQLDPAIARQRPLSFFAYGLGETVGW
ARPGTHAALLDALAAFGFPVCEHRCVSQGVEGLIAFHERIEALRPGLPYDIDGVVYKVND
VRLQEELGFVSREPRWAVAHKYPAQEEMTRLIGIDIQVGRTGALTPVARLEPVFVGGVTV
TNATLHNEDEIRRKGVLVGDWVIVRRAGDVIPEVVAPVVDRRDGNETAFVMPTSCPICGS
HAVRGEDEAVTRCSGGLFCPAQRKQALIHFASRKAMDIEGLGDRLVEQLVDNAIVKTPAD
LYKLGVLGLASLERMAEKSAANVVAAIEKSRETTLQRFVYALGIRNVGEATARDLARHFG
ALDTLIAADVAALQAVPDVGPVVAQSIHEFFAEPHNREVIEQLRAAGVHWAEHEPARHQD
GPLAGKTLVVTGTLPSLTRDEAKALIEAAGGKVAGSVSKKTDYVVAGEAAGSKLEKAQQL
NVSILDEAGLRALLSAESGDAPETGAQNALF
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccccgcaggagaaggcgcagcgcgcacaggcgctgcgcgagacgctcgatcgc
tacaatcgcgagtattacgtgctcgacacgccctcggtgccggatgccgagtacgaccgg
ctgttcgccgagctgcaggccctggagcaggcgtatccggctctggcgacgccggactct
cccacccggcgcgtgggcggcgcaccgctgccggaactgacgccggtcacccaccgggtg
ccgatgctgtccatcaacaccgagaccgacaagagcgcccagggcgctctggccttcgac
gcgcgggtgcgccgcgcgctgggtctggagacggacgcgccggcggtggaatacgcggcc
gagctcaagttcgacggtctcgccatcaacctgcgctacgaggacggcgtgctggtgcag
gcggccacccgcggcgacggccagaccggcgaggacgtgacccacaacgtgcgcaccatc
ggccagatcccgctgcgcctgagcggcgaggcgccgccggtgatcgaggtgcgcggcgag
atctacatgcggcgcgacgccttcgaggcactcaacgcgcggcagcgcgaggctggcctc
aagaccttcgtcaatccacgcaacaccgctgccggcgccatccgccagctcgatccggcc
atcgcgcgccagcgcccgctgagcttcttcgcctacgggctgggcgagacggtcggctgg
gcgcggccgggcacccatgctgcgctgctcgacgcgctggcggccttcggtttcccggtg
tgcgagcatcgttgcgtctcccagggcgtcgagggcctgatcgccttccatgaaaggatc
gaggccctgcgccccgggctgccctacgacatcgatggcgtggtctacaaggtcaacgac
gtccgcttgcaggaggaactgggcttcgtcagccgtgaaccgcgctgggcggtggcgcac
aagtatccggctcaggaagagatgacccgcctgatcggtatcgacatccaggtcggccgt
accggcgcgctgaccccggtggcgcggctcgaaccggtgttcgtgggcggggtcacggtc
accaacgccactttgcacaacgaggacgagatccggcgcaagggcgtgctcgtcggcgac
tgggtgatcgtgcgccgggccggcgacgtgattcccgaggtggtggcgccggtcgttgac
cggcgcgatggaaacgagacggcatttgtcatgccgacgagctgccccatctgcggctcc
catgcggtgcgcggcgaggacgaggcggtgacccgctgttccggcggcctgttctgcccg
gcccagcgcaagcaggcgctgatccattttgccagccgcaaggccatggacatcgagggc
cttggcgacaggctggtggagcaactggtggacaacgccatcgtcaagacgccggccgat
ctgtacaaactcggggtgctcgggctggcgagcctggagcggatggcggaaaagtccgcg
gcgaacgtggtcgccgccatcgagaagagccgcgagacgacgttgcagcgcttcgtctac
gcgctgggcatccgcaacgtgggcgaagccaccgcgcgcgatctggcacggcacttcggt
gcgctcgacacgctcatcgcggccgatgtggcagcgctgcaggcggtgccggacgtgggg
ccggtggtggcccagagcatccacgagtttttcgccgagccgcacaaccgcgaagtgatc
gagcaattgcgcgcggccggcgtccattgggccgagcatgaaccggcgcgccaccaggac
ggcccgctcgcgggcaagacgctggtggtcaccggcacgctcccgtccctgacccgggac
gaggccaaggccctcatcgaagcggccggcggcaaggtggccgggtcggtctcgaagaag
accgactatgtcgtcgctggcgaagcggcgggcagcaagctcgaaaaagcgcagcaattg
aatgtgagcattctggatgaagccggcttgcgtgcgctgctgtccgccgagtcgggggac
gcccccgagaccggcgcccagaatgcactgttttga
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