Azospirillum sp. TSH100: E6C72_00410
Help
Entry
E6C72_00410 CDS
T09516
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
azs
Azospirillum sp. TSH100
Pathway
azs03030
DNA replication
azs03410
Base excision repair
azs03420
Nucleotide excision repair
azs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E6C72_00410 (ligA)
03410 Base excision repair
E6C72_00410 (ligA)
03420 Nucleotide excision repair
E6C72_00410 (ligA)
03430 Mismatch repair
E6C72_00410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azs03032
]
E6C72_00410 (ligA)
03400 DNA repair and recombination proteins [BR:
azs03400
]
E6C72_00410 (ligA)
Enzymes [BR:
azs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E6C72_00410 (ligA)
DNA replication proteins [BR:
azs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E6C72_00410 (ligA)
DNA repair and recombination proteins [BR:
azs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E6C72_00410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E6C72_00410 (ligA)
MMR (mismatch excision repair)
DNA ligase
E6C72_00410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E6C72_00410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCG86329
LinkDB
All DBs
Position
1:complement(87995..90361)
Genome browser
AA seq
788 aa
AA seq
DB search
MQDLFDTPPNPRSIAVDALTPDLAAAELAALAAEIAHHDRLYHQQDQPEISDADYDALVR
RNLAIETRFPDLRRADSPSLRVGAAPAAGFGKVRHAIPMLSLGNAFAPDDVAEFDARVRR
FLGLSDDAPLTFVAEPKIDGLSCSLRYEKGELVLAATRGDGAEGENVTANVRTIRDVPHR
LPAPFPAVLEVRGEVYMSRDDFLAMNAARAEKGEPLFANPRNAAAGSLRQLDSSITASRP
LCFFGYALGELSEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRRRAGL
PFDIDGVVYKVDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPV
AELEDITVGGVVVSRATLHNEDEIARKDIRVGDLVVVQRAGDVIPQVVEVVLSQRPADSV
PYVPVESCPVCGSLAIREAGEVVRRCTGGLICAAQAKERLRHFVSRDAFDIEGLGEKIIE
EFWDEGFIKSPVDIFTLEGRVELIGRPGWKERSVQNLFKAIQQRRAGIDLHRVIYALGIR
HVGEVTAKSLARQYRTMEAWVDGMLTAEQAMPGQEWRDLHALSGVGPVTADTILAWFADP
ESGSKLDFYAGNDALRLETIIGSLGIKRLNTRAAQALATRYGSLAGWRAAMERAVGQAPG
RAWLDLVATPDVGEVAAEELAGFFAEERNLVIVRGLMERLTVLEAEVPKASNSPIAGKTV
VFTGTLERMTRSEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKELGVEILTED
EWLAKIGG
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatctgttcgacacgccgcccaatccccgcagcatcgccgtcgatgccctgacg
ccggacctggcggcggcggaactggcggcgctggccgccgagatcgcccatcatgaccgg
ctctatcaccagcaggaccagccggagatctccgacgccgactatgacgcgctggtccgc
cgcaacctcgccatcgaaacacgcttccccgatctgcgccgcgccgattcgccgagcctg
cgcgtcggcgccgctccggccgccggcttcggcaaggtgcgccacgccatcccgatgctg
tcgctcggcaatgccttcgcgcccgacgatgtggcggaattcgacgcccgcgtccgccgc
ttcctcggcctgtccgacgatgcgccgctgaccttcgtggccgagccgaagatcgacggg
ctgtcctgctcgctgcgctatgagaagggcgaactggttctggccgccacccggggcgac
ggggcggagggcgagaacgtcaccgccaacgtccgcaccatccgcgatgtgcctcaccgc
ctgccggcgcctttccccgctgtgctggaggtccgcggcgaagtctatatgagccgcgac
gacttcctggcgatgaacgccgcccgtgccgagaagggcgagccgctgttcgccaacccg
cgcaacgcggcggccggcagcctgcggcagctcgattcctcgatcaccgcatcccggccg
ctctgcttcttcggctatgcgttgggtgagctgtcggagccgatcgcagagacccaatgg
ggcatccgcgagcggctgaagggctggggcttccagctgaaccgcccggcggagctgtgc
gacggcaaggacaagctgctggcttattacgagggcatcggccggcggcgcgccggcctg
cccttcgacatcgacggcgtcgtctacaaggtcgacagcctggagcttcagcaacgtctg
ggcttcgtcagtcgggcgccgcgctgggccatcgcccataagttcccggccgaacaggcg
cagacgcggctgaaggccatcaccatccaggtcgggcgcaccggtgcactgaccccggtg
gcggaactggaggacatcaccgtcggcggcgtcgtcgtcagccgcgccaccctgcataat
gaggacgagatcgcccgcaaggacatccgcgtcggcgatctcgtggtggtccagcgcgcc
ggcgacgtcatcccgcaggtggtcgaggtggtgctgtcgcagcgcccggccgactccgtg
ccctatgtgccggtggagagttgcccggtctgcggcagtctcgccatccgcgaggcgggc
gaggtggtgcgccgctgcaccggcggcctgatctgcgccgcccaggccaaggaacggctg
cgccatttcgtctcccgcgacgccttcgacatcgaagggctgggcgagaagatcatcgag
gaattctgggacgagggcttcatcaagtcgcccgtcgacatcttcactctggaaggccgc
gtcgagctgatcggccggccgggctggaaggagcggtcggtccagaatctgttcaaggcc
atccagcagcgccgcgccggcatcgatctgcaccgggtgatctacgcgctgggcatccgc
catgtcggcgaggtgacggcgaagtcgctggcccgccagtacaggacgatggaggcttgg
gtcgacggcatgctgacggccgaacaggcgatgccgggtcaggaatggcgcgacctgcac
gcgctgagcggtgttggaccggtcaccgccgataccatcctcgcctggttcgccgatccg
gagagcgggtccaagctggacttctatgccgggaacgacgcgctgcggctggagaccatc
atcggttcgctcggcatcaagcggctgaacacacgggccgcccaggcgctggccacccgc
tacggcagtcttgccggttggcgggcggcgatggagcgggcggtcgggcaggcgccgggg
cgggcgtggctcgatttggtcgccacccccgacgtcggcgaggtggcggccgaggaactg
gccggcttcttcgccgaggagcgcaatctggtcatcgtccgcggcctgatggagcggctg
accgtgttggaggcggaggtgccgaaggccagcaactccccaattgccggcaagacggtg
gtcttcaccggcacgctggagcggatgacccggtcggaggccaaggcgcgtgccgaatcg
ctgggcgccaaggtcgcgggttcggtgtccggcaagaccgactatctggtcgccggtgcg
gatgccggcagcaaggcggcaaaggccaaggagctgggcgtcgagatcctgaccgaggac
gagtggctggccaagatcggcggatga
DBGET
integrated database retrieval system
