Arthrobacter zhaoxinii: N2K95_08175
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Entry
N2K95_08175 CDS
T09564
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
azx
Arthrobacter zhaoxinii
Pathway
azx03030
DNA replication
azx03410
Base excision repair
azx03420
Nucleotide excision repair
azx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N2K95_08175 (ligA)
03410 Base excision repair
N2K95_08175 (ligA)
03420 Nucleotide excision repair
N2K95_08175 (ligA)
03430 Mismatch repair
N2K95_08175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azx03032
]
N2K95_08175 (ligA)
03400 DNA repair and recombination proteins [BR:
azx03400
]
N2K95_08175 (ligA)
Enzymes [BR:
azx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N2K95_08175 (ligA)
DNA replication proteins [BR:
azx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N2K95_08175 (ligA)
DNA repair and recombination proteins [BR:
azx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N2K95_08175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N2K95_08175 (ligA)
MMR (mismatch excision repair)
DNA ligase
N2K95_08175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N2K95_08175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
HHH
HHH_3
UPF0758_N
zinc_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
UWX95683
LinkDB
All DBs
Position
1749826..1751799
Genome browser
AA seq
657 aa
AA seq
DB search
MARALSAARAYERTDVEEMSDDRFDRLRAAVLAYETANGLAASHGLHTAVGHGGAEGGDT
KHAAPAGSLEKPGEEKVIEFAAQHPDAVVEPKIDGMALILRYKDGRLFSAARRGDGHTGE
SVIDKVRGVDGLPELAGEGDFEVRGELYLNDANKGTADALRAAAGKPPFRNARNGVAGML
AKDGSVYAGLFSFAAYSTTIRGDADHLEAMEELAGLGFTTARSLLPPSVLAAPDPMAAVA
ALGAERSELNFPIDGAVLKVPAAAERHALGEGARAPKWAVAYKYPPVEAPTVVEDIELDI
GKTGRLSLRARFAPVDVDGSTIEYASLHNVRDLLRKDIRVGDTVMAYKANDIIPQIHLPR
ADLRTASSRPWEPPATCPRCGGGFDKSTELWRCPNPGCSVSGRISYAVSADAGLDIDGVG
GAVGDALIEAGLVQDVSDLFRLTADQLAGLPLGTTDTGADRVLGAKNANKIRGRIEEAKS
RPLNRVITALAMRYTGRTFGRRLAASFGTMDNLRAASVEELARVEGIGWTKAEVIHAGLK
ANGPVIDRLAAAGVNMGAPAPEGRDAGAPKLTTPDGGAMNVVITGSLKGSALGSLTRAAA
QELIEANGGRAAGSVSSSTSLLVCAEPGSSKFLKAQQLGIRIVTPDEFAQMLDDGEG
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgggccctttccgcggccagggcctatgagcgcaccgacgtcgaggaaatgtcc
gacgaccgtttcgaccggctccgggccgcggttcttgcctacgaaacagccaacggcctt
gccgcatcacacggcctgcacaccgcagtagggcacgggggagccgaaggcggcgatacg
aaacacgcagccccggccggttccttggagaagcccggcgaggagaaggtcatcgagttc
gccgcacagcatcccgatgccgtggtggagccgaaaatcgacggaatggccctcattctc
cgctacaaggacgggcgtctcttttcagcggcgaggcgcggagacggccataccggtgaa
agcgtcattgacaaggtccgcggcgtcgacggcctgcctgagctcgccggagagggagac
ttcgaggtccgcggcgagctgtacctgaacgacgcgaacaagggtaccgcggacgccctc
cgcgccgcagcaggcaagcccccgttcaggaacgcccgcaacggcgtggccggaatgctg
gccaaagacggatccgtctatgccggcctgttctcctttgctgcctactccaccaccatc
cgcggcgacgctgaccatcttgaggcaatggaggaactggctggcctgggcttcaccacc
gcccgctccctgttgccgccgtccgtgctggcagcgccggacccgatggcagcagtcgct
gccctgggcgccgagcgcagcgagctgaacttccccatcgacggtgcggtcctgaaagtc
cccgccgcggctgagcggcacgccctcggggaaggggcacgggcgccgaagtgggcggtg
gcctacaagtacccgccggtggaagcgcccaccgtcgtcgaagacatcgaactcgacatc
ggcaagaccggacggttgtccctccgtgcccggtttgcgcccgtggacgtggacggctcc
accatcgaatatgcctcgctgcacaacgtccgggacctgctgaggaaggacatccgcgtc
ggcgacaccgtcatggcgtacaaggccaacgacatcatcccgcagatccatctgccccgt
gccgatctgcggaccgcgtcctcccggccgtgggaacccccggccacctgccccaggtgc
ggcggcgggttcgataagtccaccgagctgtggcgctgccccaaccccggatgctccgtt
tccgggcgcatttcctacgcggtctcggcagacgccggcctggacattgacggcgtcggc
ggcgccgtcggggatgcccttatcgaggcgggactggttcaggacgtctcagacctcttc
cgcctcaccgcagatcagctggcagggctcccgctgggcaccactgatacgggagccgac
cgcgttctcggggcaaagaacgcgaacaagatcagaggccggatcgaggaggctaagtcg
cggccgctgaaccgggtcattacggccctggccatgcgctacacgggacgcaccttcggc
cgccgcctggccgcatccttcggaaccatggacaacctccgggccgcttccgtcgaggag
ctggcacgtgttgaaggcatcggctggacaaaggccgaggtgatccacgcagggctgaag
gccaacgggccggtgatcgaccgtctggcagccgcgggggtaaacatgggagctccggca
ccggaggggcgggacgccggggctccgaagctgaccaccccggacggcggagccatgaac
gtagtcatcaccggctcgttgaaaggcagcgcactgggttcgctgacgcgggcggccgcg
caggaactcatcgaagccaacggcggccgcgcggccggctcggtatcctcatccacctca
ctgctggtgtgtgccgagcccgggagcagcaagttcctcaaggctcagcagctgggcatc
aggatcgtcactcctgatgagttcgcgcagatgctggacgacggcgagggctaa
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