Buchnera aphidicola Bp (Baizongia pistaciae): bbp_062
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Entry
bbp_062 CDS
T00111
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bab
Buchnera aphidicola Bp (Baizongia pistaciae)
Pathway
bab03030
DNA replication
bab03410
Base excision repair
bab03420
Nucleotide excision repair
bab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
bbp_062 (lig)
03410 Base excision repair
bbp_062 (lig)
03420 Nucleotide excision repair
bbp_062 (lig)
03430 Mismatch repair
bbp_062 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bab03032
]
bbp_062 (lig)
03400 DNA repair and recombination proteins [BR:
bab03400
]
bbp_062 (lig)
Enzymes [BR:
bab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
bbp_062 (lig)
DNA replication proteins [BR:
bab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
bbp_062 (lig)
DNA repair and recombination proteins [BR:
bab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
bbp_062 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
bbp_062 (lig)
MMR (mismatch excision repair)
DNA ligase
bbp_062 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
bbp_062 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
DUF4796_N
Gemini_AL3
Motif
Other DBs
NCBI-ProteinID:
AAO26801
UniProt:
Q89B02
LinkDB
All DBs
Position
71142..73160
Genome browser
AA seq
672 aa
AA seq
DB search
MKDIKNYILKLQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFKDSPT
QSVGSENLPEFKKFSHITPMLSLNNVFIKNDFLKFYKKIVNNITVEKIFFCSELKFDGVA
INLIYINGLLFRAVTRGNGYEGEDVTSNVNMISSVPKKLIGIDIPETLEVRGEIFMLKSD
FKKLNVRLTKFKKKLFSNSRNAASGSLRHKNAKVTELRSLTFYCYGCGYCSYENFTDSHF
LRLKKLKSWGFPISDYNFLHSSYDEILRFYNFIQNERYFLNFNIDGIVIKVDSICLQKSL
STTSKAPRWAVAYKFSDKIKITTIMNILYQVGRTGVITPVAQVTPIYISGVLIKKVSLHN
FNEIRRLNLNIGDSVFIKRSGDVIPHIIEVASKCKLQRNEDISIPKFCPECGSKLKVDSF
SNIKIRCMAGLKCLSQFKKLLHYFCSKKGLNILGLGPKIIDKLVDLGYVSDLSDIFDLNV
SLLTKVENIGIIKSQNIIRSINNSKNVSFSKFLCSLGIFEVGSIVARSISNYFFTLDKFM
NSSKEEFLLINGIGVNIADNLYNFINDEFNKNIIFKLSKKLNISSDINAIIDNNNTLFRK
KIVFSGSFSNFSRSKIIELSKKLGIIVVSSVSKSVDYIIIGKKPGRKLIKAKKFSIPGIY
EKEFLNIINVYL
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatattaaaaattatatattaaaattacaagatgaaattcgttatcatgcgtat
ttgtatcatactttaaattctcctaaaatttctgatgaaaaatatgattttttagtgata
gaattgcaaagattagaaaaaaaatgtaaatatagtgttagatttaaagattctcctaca
caatctgtaggttcagaaaatttacctgaatttaagaagtttagtcatattactccaatg
ttatctttaaataatgtatttattaaaaatgattttttaaaattttataaaaaaattgtc
aataatattacagtcgaaaaaatttttttttgttccgaattaaaatttgatggtgtggct
ataaatttaatatatataaatggactattgtttcgcgctgtaactcggggtaatggttat
gaaggtgaagatgtaacaagtaatgttaatatgatttcgtctgttcctaaaaagttaatt
ggtatagatatacctgaaactttagaggtaagaggtgaaatttttatgttaaaaagtgat
tttaaaaaattaaatgttcggttgacaaaatttaaaaaaaaattgttttcgaattctaga
aatgctgcttctgggtctttgcgtcataaaaatgctaaagtaacagaattaagaagtttg
acattttattgctatggatgtggttattgcagttatgaaaattttacggacagtcacttt
ttgagattaaaaaagttaaaaagttggggttttccaatcagtgattataattttttgcat
tcttcgtatgatgaaatattgcgtttttataattttattcaaaatgaacgctatttttta
aattttaatattgatggaatagtgattaaagttgattctatttgtctgcaaaaatcatta
agtactacgagtaaagcgcctcggtgggcagttgcatataaattttctgataaaattaaa
ataactacaataatgaatattttatatcaagtagggcgtactggtgtaattactccggta
gcgcaagttactccaatatatatatctggtgttttaataaaaaaagtttctttgcataat
tttaatgaaataagaaggttaaatttaaacattggtgattctgtttttattaagcgatct
ggcgatgtaattcctcacataattgaagttgcatctaaatgtaaattacaacgcaacgaa
gacattagtattcctaaattttgtccagaatgtggttcaaaattaaaggttgatagtttt
agtaatattaaaatacgttgtatggctggattaaaatgtttaagtcaatttaagaagtta
ttacattatttttgttctaaaaagggattaaatattcttggtttgggtccaaaaattata
gataaattagtagatttaggttatgttagtgatttatcagatatttttgatttaaatgta
tcgttgttaactaaagtagaaaatataggtataataaaatcacaaaacattataagatct
atcaataattctaagaatgttagtttttcaaaatttttatgttcgttaggaatatttgaa
gtaggaagtatagtagctaggagtatttctaattatttctttacattagataagtttatg
aattcttctaaagaagaatttttgttaataaatgggattggtgtaaatatagctgataat
ttatataattttattaatgatgagtttaataaaaacattatatttaagttatcgaaaaaa
ttaaatatttcttcagatattaatgctattattgataataataataccctgtttagaaag
aaaattgtatttagtggttcgttttctaatttttctcgttcaaaaattatagaactatct
aaaaaattaggaataatagttgtatcttctgtttctaaatcagtagattatattataata
ggtaaaaaaccaggtagaaagctaataaaagctaaaaaatttagtatacctggtatatac
gaaaaagagtttttaaatataattaatgtttacttgtag
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