Burkholderia ambifaria MC40-6: BamMC406_1926
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Entry
BamMC406_1926 CDS
T00684
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03030
DNA replication
bac03410
Base excision repair
bac03420
Nucleotide excision repair
bac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BamMC406_1926
03410 Base excision repair
BamMC406_1926
03420 Nucleotide excision repair
BamMC406_1926
03430 Mismatch repair
BamMC406_1926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bac03032
]
BamMC406_1926
03400 DNA repair and recombination proteins [BR:
bac03400
]
BamMC406_1926
Enzymes [BR:
bac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BamMC406_1926
DNA replication proteins [BR:
bac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BamMC406_1926
DNA repair and recombination proteins [BR:
bac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BamMC406_1926
NER (nucleotide excision repair)
GGR (global genome repair) factors
BamMC406_1926
MMR (mismatch excision repair)
DNA ligase
BamMC406_1926
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BamMC406_1926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
Strep_pep
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACB64408
UniProt:
B1YSH2
LinkDB
All DBs
Position
1:complement(2143583..2145658)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPD
LVTPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGS
VTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAH
VPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPDDAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgtgccgcgtggctg
cgcgaccaactcgagcgggcgaattacgcctattacgtgctcgaccagccggatctgccc
gatgccgaatacgatcgactgttcggcgagctgcagcaactcgaaaccgatcatcccgac
ctcgtgacgcccgattcgccaacgcagcgcgtcggcggcgaggtggccggcggtttcacg
ccggtcgtccatgatgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gccgcgttcgacaagcgcgtcgccgatgcgctcggcaagacgaccgatctcgccggctcg
gtgacggacccggtcgaatatgcgtgcgagctgaagttcgacgggctcgcgatctcgctg
cgctacgagcacggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgaccgagaacgtccgcacgatccgctcgatcccgctgaagctgaagggcgcgcac
gtgccggccctgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcgtccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacggcatgccgatgccggacacgcacagcgcgctgctc
gactggtacgagtcgttcggcctgccggtgaaccgcgagcgcgcggtcgtgtacggcgcc
gacggcctgctcggcttcttccgcaaggtcggcgagaagcgcgagtcgttgccgtacgac
atcgacggcgtcgtctacaaggtgaaccggcgcgacgaacaggatcgcctcggcttcgtg
tcgcgcgcaccgcgcttcgcgctcgcgcacaagtttcccgcacaggaagcgctgacccgg
ctcgtcgcgatcgacgtgcaggtcggccgcacgggtgcgatcacgccggtcgcgcgactc
gaaccggtgttcgtcggcggcgcgacggtgaccaacgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcggcgggcgggcgacgtg
atccccgaggtcgtcggtgcgctgctcgagcgccggccggacgacgcggccgaattcgtg
atgccgaccgagtgcccggtgtgcggctcgaagatcgagcggctgccggacgaggcgatc
gcgcgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgtcgcgcgctcgacatcgacgggctcggcgaaaagatcatcgatcagctcgtc
gaactgaatctcgtgcgcacgccggccgacctgttcaatctcggtttcgcgacgctcgcg
gaactcgaccggttcgccgagaagtccgcgcagaatttgctcgactcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcattcgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcacttcgggtcactgaccccgatcatggacgcgtcgatc
gaggaactgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgatccaccagttc
ttcgcggaagaacacaaccgcaccgtgatcgagcaactgcgcgcgcccggcaaggtcacg
tggcccgaaggcccgcccgcgccgaaggcgccacagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgaatctcacccgcgacgcggcgaaggagatgctcgaagcg
gcgggcgcgaaagtcgcgggctcggtatcgaagaagacggattacgtggtcgcgggcgcc
gatgccggcagcaagctcgcgaaggccgaggaactcggcatccccgtactggacgaagac
ggactgcaccaactcctggagggcaacaccccatga
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integrated database retrieval system
