Bacillus sp. FJAT-18017: AM500_24095
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Entry
AM500_24095 CDS
T10545
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bacf Bacillus sp. FJAT-18017
Pathway
bacf03030
DNA replication
bacf03410
Base excision repair
bacf03420
Nucleotide excision repair
bacf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AM500_24095 (ligA)
03410 Base excision repair
AM500_24095 (ligA)
03420 Nucleotide excision repair
AM500_24095 (ligA)
03430 Mismatch repair
AM500_24095 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacf03032
]
AM500_24095 (ligA)
03400 DNA repair and recombination proteins [BR:
bacf03400
]
AM500_24095 (ligA)
Enzymes [BR:
bacf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AM500_24095 (ligA)
DNA replication proteins [BR:
bacf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AM500_24095 (ligA)
DNA repair and recombination proteins [BR:
bacf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AM500_24095 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AM500_24095 (ligA)
MMR (mismatch excision repair)
DNA ligase
AM500_24095 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AM500_24095 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_pol_A_CTD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ALC92501
UniProt:
A0A0M5JJ59
LinkDB
All DBs
Position
complement(5138812..5140815)
Genome browser
AA seq
667 aa
AA seq
DB search
MDLQAAEMKVRELQTLLHQYGYEYYVLDKPSVPDAEYDRLLRELIELEEMYPQFKTPDSP
TVRVGGAVLDMFEKVRHRSPMLSLGNAFNEADLRDFDRRVRQVVGNNFSYVCELKIDGLA
VSLRYEDGRFVQGATRGDGTTGEDITANLRTIKSIPLRLRESVSLEVRGEAFMPKRSFEK
LNEAKAERGEEPFANPRNAAAGSLRQLDTSIAASRNLDIFLYAVADAAALGLQSHSEALD
YIEKIGFKTNKERRKCGSIEEVLEYINGWGEKRPNLDYDIDGIVIKVDSYYQQEELGYTA
KSPRWSIAYKFPAEEVVTTLLDIELSVGRTGVITPTAILEPVRVAGTTVQRASLHNEDLI
REKDLKIGDKVVVKKAGDIIPEVVNVLPEQRTGDEKDFFMPTNCPECDNELVRIEGEVAL
RCLNPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFAHKLIEDVADIYKLTADQLLAL
ERMGEKSVTNLLNAIEASKENSLERLLFGLGIRHVGEKAAKTLAQEFETMDSLAAATETE
LIAISEIGEKMASSIAAFFAEEEVMELLAELKEVGLNMDYKGPRKSAAPADSMFAGKTVV
LTGKLEKLTRNEAKEKLEALGANVAGSVSKKTDILVAGEDAGSKLTKATELGIEIWDEER
LLEEIEQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcaagctgccgaaatgaaagtaagggaactgcaaaccctgctgcatcaatat
ggatatgaatattatgttcttgataaaccatcagttccggatgctgaatacgataggctc
ctccgtgaattgattgagctagaagagatgtatccgcagtttaaaacccccgactcccct
actgtacgggtaggaggggctgtgctggatatgtttgaaaaggtccggcaccggagtccg
atgcttagccttggaaatgccttcaacgaggctgatctccgggattttgacaggagagtc
cggcaggttgttggaaacaatttttcctatgtttgcgaactgaagattgatggtctggcg
gtatcactcaggtatgaggacggacgcttcgtccagggggcaaccaggggcgacggaaca
actggagaggatatcaccgcaaatcttcgcacaattaaatcaatccctttgcggttaagg
gagtctgtttcattagaagtgcgcggcgaggcatttatgccgaagcgctcctttgaaaaa
ctgaatgaagcaaaggccgaacgcggtgaggagccatttgcaaatcccagaaatgcggct
gcaggttctcttcgccagcttgatacaagcatagcagcatccaggaacctagatatattt
ctatatgcggtggctgatgctgctgccctcggtcttcaatcgcatagcgaagcccttgat
tatattgaaaaaatcggatttaagacgaataaggaaaggcgcaaatgtggaagcattgag
gaagtcctggagtatataaatggctggggtgaaaaacgcccaaatctggattatgacatc
gacggtatcgtcatcaaggttgattcctattaccaacaggaggaactggggtatacggca
aaaagccctcgctggtctattgcgtataagtttcctgctgaagaagttgtcacaaccctc
ctggatattgagctgagtgttggccgaaccggggtaatcacaccgacggccatccttgaa
ccagtacgtgttgccgggacaacggtccagcgtgcgtcccttcataatgaagacctgatt
agagaaaaggatttgaagattggcgataaggttgtcgtcaaaaaagccggcgatattatt
cctgaggttgtcaacgtactccctgagcaaaggactggtgatgaaaaggacttctttatg
cccacaaactgtcctgaatgcgataatgaacttgtccgtatcgagggtgaagttgcactc
cgctgcttgaacccaaaatgccctgcacaaatcagggaagggctgattcactttgtttct
cggaatgcaatgaatatcgatggccttggtgagaaggtcatatctcaattgtttgcccat
aaattgattgaagatgttgctgatatctataagttaactgccgatcagctcctggccctt
gagaggatgggtgaaaagagcgtcaccaacctgctcaatgcaatagaagcctctaaggag
aattcgcttgaacggctcctatttgggcttgggatccgccatgtcggtgaaaaggctgcg
aaaactctggcgcaggaatttgaaacaatggacagcctggctgcagcaacagagactgag
ctaattgccataagtgaaattggtgaaaaaatggccagttcaattgcggcgttctttgca
gaggaagaggtaatggaattacttgcagaactgaaggaagttggccttaacatggactat
aagggtccgcgtaagtccgctgcccctgcagattcaatgttcgcgggcaagacagttgtt
ttgacagggaaattggaaaaactgactagaaatgaagcgaaagaaaagcttgaagcgctc
ggggcaaatgtagccggcagcgtcagtaagaagacagatattcttgtcgccggtgaggat
gcaggctcaaagctcacaaaggcgactgagctgggaatagaaatttgggatgaagagagg
ctgcttgaggaaatcgaacaataa
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integrated database retrieval system
