Biomaibacter acetigenes: D2962_03900
Help
Entry
D2962_03900 CDS
T09817
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bacg
Biomaibacter acetigenes
Pathway
bacg03030
DNA replication
bacg03410
Base excision repair
bacg03420
Nucleotide excision repair
bacg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D2962_03900 (ligA)
03410 Base excision repair
D2962_03900 (ligA)
03420 Nucleotide excision repair
D2962_03900 (ligA)
03430 Mismatch repair
D2962_03900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacg03032
]
D2962_03900 (ligA)
03400 DNA repair and recombination proteins [BR:
bacg03400
]
D2962_03900 (ligA)
Enzymes [BR:
bacg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D2962_03900 (ligA)
DNA replication proteins [BR:
bacg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D2962_03900 (ligA)
DNA repair and recombination proteins [BR:
bacg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D2962_03900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D2962_03900 (ligA)
MMR (mismatch excision repair)
DNA ligase
D2962_03900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D2962_03900 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
AYO29861
UniProt:
A0A3G2R3E6
LinkDB
All DBs
Position
797807..799828
Genome browser
AA seq
673 aa
AA seq
DB search
MDKGKAEARIKDLREKINYHNKQYYVYDNPVISDAEYDKLMRELESLEREFPEFVTPDSP
TQRVGGEPLPAFRQVTHRVPMMSLADAFDEGELKDFHRRVTEAVGQDVEYVVELKIDGLA
ISLTYENGLLITAATRGDGVVGEDVTQNIKTIKSVPLRLDFPEDKKPSIIEVRGEVYLPK
EGFRKLNEEREDMELPLFANPRNAAAGSLRQLDPKITASRPLSTFMYALGHVEGVEFTKH
IEVLEFYKTCGFRVNPDIVLFKNFNDVMDYCMSWREKRDTLPYEIDGIVIKVNSLEQQRI
LGFTAKSPRWAIAYKFPAEQKTTVINDIIVRVGRTGVLTPTAELTPVRIAGSTVSRATLH
NEDYIKEKDIRIGDTVVVQKAGDVIPEVVEVIKEKRTGNEKVFKMPHRCPECGAEAIRLP
GEAAYRCTGVSCPAQIRRSIIHFVSRDAMDIRGLGEAIVTQLLSEGLIKDAADIYKLTRE
DLVPLERMGEKSAANLLSAIENSKSRPLGRLIYALGIPFIGSKAATILADAFGSMEKLEK
ATYEELIDIPEIGDKMAESIVTFFKQDQTRRLLSRLKAAGVNMGAEKKEKSEEGPSPFKD
LTFVLTGTLKHYTRPQATEIIEKLGGKVTGSVSKKTDYVVVGEDPGSKYDKAVKLGVKIL
NEEQFEQMLGRNM
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttggacaaaggaaaggccgaagcccgcattaaagacctaagggaaaaaataaattaccac
aacaagcaatactatgtctatgacaaccctgttatatccgatgccgaatatgataaactg
atgcgggaactggaaagtcttgaaagggagtttccggagttcgtaacccccgattccccc
acccagagggtgggcggggagcccctgccggccttccgtcaggtgactcaccgggtgccc
atgatgagccttgccgatgcctttgatgaaggagaacttaaagattttcaccggcgggtg
acggaagccgtgggacaggatgtggagtatgtggtggagctcaagatagacgggcttgcc
atctccctgacatatgaaaacgggcttcttataacggcggctacccggggagatggagta
gtgggggaggatgtgacccaaaacatcaagaccataaagagcgtacctctgcgcctggat
tttcctgaagataaaaagccttctataatagaagttcggggagaggtttaccttcccaaa
gaaggatttagaaagctcaacgaagagcgggaggatatggagcttccactctttgctaac
cctcgaaatgcggcggcggggtccctccggcagctagacccaaaaatcactgcttccagg
cccctttctaccttcatgtacgccctggggcacgtagaaggagtagaatttaccaaacat
atagaggtattagagttttataaaacctgtgggtttcgggtaaaccccgatatagtgctt
tttaaaaacttcaatgatgtcatggattactgcatgagctggagggaaaaaagggatacg
ctgccttacgaaatagacggcattgtaataaaggtaaattctcttgaacaacagcgcatc
ctgggcttcaccgccaaaagcccccgttgggccatcgcatataaatttcctgcggagcaa
aaaactacggtcataaacgatatcatagtccgggtaggaaggaccggggttttgaccccc
acggcggagcttacaccggtccgcatcgcaggttctacggtcagcagggctaccctccac
aatgaggattatataaaggaaaaagatattcgcataggagatactgtggtagtgcaaaag
gccggtgatgtgataccggaagtggtagaggtcataaaagaaaagcgcaccggtaatgaa
aaagtttttaaaatgccccaccgttgcccggaatgcggagccgaggccataaggcttccg
ggtgaggccgcctatcggtgcacgggggtttcctgcccggctcaaataaggcggagcatc
atacactttgtatcaagggatgccatggatatccggggcctgggggaagccatcgtaacg
cagcttctatcggaaggccttataaaggatgcggcagatatctataaactcacccgggag
gacctggtacccctggagcgaatgggggaaaaatccgccgccaacttgctttcagctatt
gaaaatagtaagagccggcccctgggaagactcatctatgccctgggcattccttttata
ggctccaaggccgctactatcctggccgatgccttcggttccatggagaaactggagaag
gccacttatgaagaacttatcgatatcccggaaatcggcgacaaaatggccgaaagtatc
gtcaccttttttaaacaagaccagaccagacggcttctttcccgcctcaaagccgccggg
gtaaacatgggagcggaaaagaaagaaaagagcgaagaaggcccttcgccgtttaaagac
ctgacctttgtgctgacggggactctcaagcattacacccgtcctcaggccacagagatc
atagaaaaactgggagggaaagtaaccggcagtgtgagcaaaaagaccgactacgtggtg
gtaggagaggacccgggttctaaatacgataaggcagtgaagctgggagtaaaaatactg
aacgaggaacagttcgagcaaatgttaggtagaaatatgtaa
DBGET
integrated database retrieval system
