Bacillus sp. Pc3: SB24_06350
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Entry
SB24_06350 CDS
T03544
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bacp
Bacillus sp. Pc3
Pathway
bacp03030
DNA replication
bacp03410
Base excision repair
bacp03420
Nucleotide excision repair
bacp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SB24_06350 (ligA)
03410 Base excision repair
SB24_06350 (ligA)
03420 Nucleotide excision repair
SB24_06350 (ligA)
03430 Mismatch repair
SB24_06350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacp03032
]
SB24_06350 (ligA)
03400 DNA repair and recombination proteins [BR:
bacp03400
]
SB24_06350 (ligA)
Enzymes [BR:
bacp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SB24_06350 (ligA)
DNA replication proteins [BR:
bacp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SB24_06350 (ligA)
DNA repair and recombination proteins [BR:
bacp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SB24_06350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SB24_06350 (ligA)
MMR (mismatch excision repair)
DNA ligase
SB24_06350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SB24_06350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AJC24821
LinkDB
All DBs
Position
complement(1392475..1394481)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLIQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLN
FLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTSCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEKLGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacagactg
attcaggagctgattgccatagaggaagagcacccggaactcagaacgcctgattcgccc
acacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgatctccgcgattttgaccgccgggtc
cgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaagcg
ctcaatgaagaaaggctgaaacatgaagaggagccgttcgccaatccccggaacgcggct
gcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgagatgggtgtggaaacacagagtcagggcctgaat
tttctggatgagctcggttttaaaacaaaccaggaacgaaaaaaatgcgccacgatagat
gaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaaatt
gacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacggca
aaaagcccgcgctgggcgattgcttataaattcccggcggaagaggtcgtgacaaaactg
ctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgaccgccgttctggaa
ccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatcatc
cctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaatatg
ccgaccagctgccctgagtgcgaaagcgagctagtgcgcattgaaggagaagtcgcgctg
cgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtctca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttgtataagctgacgaaagagcaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagctacggaagaagag
ctgcttgcggtggatgaaatcggcgaaaagatggccgatgccgttatcacctatttccgc
aaagaagaaatgcttgagctattgaatgaacttgagaaactcggtgtgaacacactctac
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccggagaa
gcagccggaagcaagctgacaaaagcgcaggaattaaacattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
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integrated database retrieval system
