Bacillus sp. SDLI1: AUL54_07280
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Entry
AUL54_07280 CDS
T05207
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bacs
Bacillus sp. SDLI1
Pathway
bacs03030
DNA replication
bacs03410
Base excision repair
bacs03420
Nucleotide excision repair
bacs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUL54_07280 (ligA)
03410 Base excision repair
AUL54_07280 (ligA)
03420 Nucleotide excision repair
AUL54_07280 (ligA)
03430 Mismatch repair
AUL54_07280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacs03032
]
AUL54_07280 (ligA)
03400 DNA repair and recombination proteins [BR:
bacs03400
]
AUL54_07280 (ligA)
Enzymes [BR:
bacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUL54_07280 (ligA)
DNA replication proteins [BR:
bacs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUL54_07280 (ligA)
DNA repair and recombination proteins [BR:
bacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUL54_07280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUL54_07280 (ligA)
MMR (mismatch excision repair)
DNA ligase
AUL54_07280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUL54_07280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
5_3_exonuc
HHH_8
zf-IS66
HHH_3
zf-tcix
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AME06161
LinkDB
All DBs
Position
complement(1559482..1561488)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELMAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFNMPTSCPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLVIAGEAAGSKLEKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttacgaatactacaccctagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgatggccatagaagaagagcacccggagctcagaacgcctgattcgccc
acacagcgggtcggaggagcggtgcttgagtcgtttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgacgatcttcgcgattttgaccgccgcgtc
cgtcaggctgtcggcgacggcgtcgcttacaatgtagagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatattacggaaaacttaaaaacgatccgaaacattccgctgaaaatgaaa
cggaacctctccatagaagtgcgcggagaggcgtacatgccgaaacagtcattcgaagca
ctcaacgaagaacggctgaaacatgaagaagagccgtttgccaatccccggaatgcggct
gcgggctcactccgacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcaaggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgatagat
gaagtgattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaaatt
gacggaatcgtcatcaaggtggattcgctcgatcagcaggaagagctcgggtatacggca
aaaagcccgcgctgggcgattgcttataaattcccggcagaagaagtcgtgacaaaactg
ctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgactgccgtcctggag
ccggtaaaagtcgcggggacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacatccgcattctcgataaagtggtcgtcaaaaaagcgggcgatatcatc
cctgaggtcgtcaatgtcttagttgaacagcggaccggagaagaaaaagaattcaatatg
ccgaccagctgccctgagtgcggaagcgaacttgtccgcattgaaggagaggtcgcgctg
cgctgtatcaacccggaatgcccggcgcaaatcagagaaggcctgattcattttgtctca
cgcaacgcgatgaatattgacggcctcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttatataagctgacaaaagaacaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacggctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactggccatgcattttgaaagcctggaaaatctgaaacaagccacagaggaagag
ctgcttgcagtagacgaaatcggtgaaaagatggctgatgccgtcatcacctacttccga
aaagaagaaatgcttgagcttttgaatgaactggaagagctcggtgtgaacacactctat
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggaaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaagcgcagatcgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttggtgatcgccggagaa
gcggccggaagcaagctggaaaaagcgcaggaattaaacattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
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