Bifidobacterium actinocoloniiforme: AB656_03340
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Entry
AB656_03340 CDS
T04036
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bact
Bifidobacterium actinocoloniiforme
Pathway
bact03030
DNA replication
bact03410
Base excision repair
bact03420
Nucleotide excision repair
bact03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB656_03340
03410 Base excision repair
AB656_03340
03420 Nucleotide excision repair
AB656_03340
03430 Mismatch repair
AB656_03340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bact03032
]
AB656_03340
03400 DNA repair and recombination proteins [BR:
bact03400
]
AB656_03340
Enzymes [BR:
bact01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB656_03340
DNA replication proteins [BR:
bact03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB656_03340
DNA repair and recombination proteins [BR:
bact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB656_03340
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB656_03340
MMR (mismatch excision repair)
DNA ligase
AB656_03340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB656_03340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKV55417
LinkDB
All DBs
Position
complement(832839..835448)
Genome browser
AA seq
869 aa
AA seq
DB search
MTMTRTGQAMLGSDEWISALQADDADAMKLGQLNLSSLTAAQAQRLWARLASWVEADQVA
YYVNDSPVSSDAAYDARMRCLQALESEFPSLDTPLSPTHRVGGSFSNDFTSVRHPSQMLS
LDDVFSIDELREWYRGVRKELDWPEGKRLPMSAEVKIDGLALNLIYRNGVLIQGLTRGDG
VTGEDITLNVRTIGSIPQNLGGDRADIPDFVEVRGEVFMRFEDFDDLNRAQEAQGKPPFA
NPRNAAAGSLRQKDPHVTAQRKLSFYAHGIGRLTWGAEHPEGTHDEVVDQTQAYDLYKKW
GIPVSPHNRQVDSFDQILSMIDYYGKHRGDIEHALDGIVVKLEDRDLQRRLGATSRAPRW
AIAYKYPPEEVDTELLDITVQVGRTGRITPVAILKPVYVAGSTVSRTTLHNPSEVKHKGV
LIGDTVVVRKAGDVIPELVGPVLDKRQGREDTLREFVMPERCPSCGAKLAPARENDKDIR
CPNVESCPAQLTERIIHMASRKAFDIEHLGEQSATALTNPEENRPDSVDVYAPDLRAQVV
RPGEEPEPYIPPAGVRLPPVQEPVLKSEAGLFSLKVEDLKDIAVWRQVPIIEERRVEGDH
WRTVRRKIGDSGLWYRVPAFYNLPKPAAGNAGAPGDSAVSGVADHPEQAEGAAMNSVPGE
QEAGFAGDEGQGQPARNTLLMLKEIDKARSVDLWRVLVALSIRHLGPTSARVIARRYTSL
DALSKADEKDLAELDGVGPEIAHSVFSWFTGARREGDWRGKILKAWTAAGVGCHTERIDQ
PQVLAGMTIVVTGSLKGFTRDSAKEAIIERGGKATTSVSKKTTYVVVGADPGSKAAKAEA
LGVAMLDEDGFRRLLETGSPDPGADQTQD
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
ttgacgatgacgaggacgggccaggcgatgctgggatccgatgagtggatttccgctttg
caagcggatgatgcggatgcgatgaagctgggccagttgaacctctccagtctgacagca
gcccaggcccaacggctctgggcccgcttggcctcctgggtggaggcggaccaggtcgcc
tactacgtcaacgattcaccggtctcatccgacgcggcctacgacgctcgcatgcgatgc
ttgcaagccctggagagtgagttcccctccctggacacgcccctttcgcccacgcaccga
gtcggcggttccttctccaacgacttcacctccgtgcgccatcccagtcagatgctgagc
ctggacgatgtcttctcaatcgatgagctgcgcgaatggtaccggggggtgcgcaaggaa
ctggattggcctgaaggcaagcggctgccgatgagcgccgaagtgaagatcgacggtctg
gccctgaacctgatttaccgcaacggcgtgctgattcagggcttgacccgaggtgacggc
gtcacaggcgaggacatcacgctcaatgtgcgtacgattggttcgatcccccagaatctg
ggcggcgatcgggctgatattcccgatttcgtggaggtgcgcggcgaagtcttcatgcgc
ttcgaggatttcgatgacctcaaccgcgcccaagaggcccagggcaaaccccccttcgcc
aaccccaggaacgcggccgcaggctccctgcgccaaaaggacccgcacgtcacggcccag
cgcaagttgagcttctacgcccacgggatcggccgactgacctggggggctgagcatccc
gaaggcacccacgatgaggtggtcgatcagacccaggcctacgatctttataagaagtgg
ggcatccccgtctccccccacaaccgccaggtggattccttcgatcaaatcctgtcgatg
atcgactattacggtaagcaccggggtgatatcgagcatgccttggatggcatcgtcgtc
aagctggaggacagggacctgcaacgccgcctaggcgccacatcgcgcgcgccgcgctgg
gccatcgcatacaagtatccccccgaggaagtcgacaccgagctcttggacatcaccgtg
caggtgggccgcactggtcgcatcacgccggtggcgattctgaagccggtttacgtagcc
ggttccacggtttcgcgcaccaccctgcacaacccttccgaggtcaagcacaagggggtg
ttgatcggcgacacggtcgtggttcgcaaggccggcgatgtgattcccgagctggtcggg
ccagtgctggacaagcgccaaggccgcgaggacaccctgcgcgagttcgtcatgcccgag
cgctgcccttcctgcggagccaagctggccccggcgagggagaacgacaaggacatccgc
tgcccgaacgtggaatcctgcccggcccagctgaccgagcgaatcatccacatggcctcc
cgcaaggccttcgacatagagcacctgggggagcaatcggccaccgcgttgacgaacccg
gaggagaaccggccggattcggttgatgtctacgcgcctgacctgcgggcccaggtcgtc
cgccctggcgaggagcctgaaccttacataccgccggcaggcgtgcggctgccgcccgtc
caggagccggtgctcaagtccgaggccgggttattctcgctcaaggtcgaggatttgaag
gacattgcggtctggcggcaggtgccgatcatcgaggagcgccgggtggagggcgaccac
tggcgcactgttcgccgtaaaatcggtgattcgggcctgtggtacagggttcctgccttc
tacaaccttcccaagcccgcagcgggcaacgctggagcccctggtgattccgccgtgtcc
ggggtcgctgaccatcccgagcaggccgaaggcgcggccatgaacagtgttcctggcgaa
caggaggcaggcttcgcgggggatgaggggcaggggcagcccgcccgcaacaccctgctg
atgctcaaagagattgataaagcgcgctctgtggacctgtggagggtgctggtggccttg
tctatccgtcacttgggccccacttcggcccgggtcatcgcccgccgttacaccagtctg
gacgcactgagtaaggccgatgagaaggatctggcggagttggacggggtgggtcccgaa
atcgcgcattcggtcttctcttggttcactggcgccagacgcgagggcgactggcggggc
aagatcctcaaggcctggaccgctgccggtgtgggctgccataccgagcgaatcgaccag
ccgcaggttctggccgggatgaccatcgtcgtgaccggcagtctgaaaggcttcactagg
gattcggctaaggaggccatcatcgagcgtggggggaaggccacgacctcggtcagcaag
aagaccacgtatgtggtcgtcggcgccgaccctggctccaaagccgctaaggccgaggcc
ctgggagtggcgatgctggacgaggacggcttccgcaggctcctggagaccggcagcccc
gacccgggcgcggatcagacccaagattga
DBGET
integrated database retrieval system
